BAC Information

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BAC

Clone NameMSMg01-207F08
Chromosome13 (Build37)
Map Location 119,639,205 - 119,723,622
singlet/doubletdoublet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207F08.T7 (MSMg01no207_f08.b1)MSMg01-207F08.TJ (MSMg01no207_f08.g1)
ACCAG390599AG390600
length1,2131,217
length of high quality
(start - end)
321 (130 - 450)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no207_f08.b1 PHD_FILE: MSMg01no207_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:08 2005CHROMAT_FILE: MSMg01no207_f08.g1 PHD_FILE: MSMg01no207_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,639,205 - 119,639,523)(119,723,244 - 119,723,622)
sequence
NNAAACACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TTCATTTATTAAATTATCTATCTCTTTAGTATAAAGTGTTTTAGAATGTA
AGGATTTGCCAAAGTGACAAGCACCCCACTGGGAATTAAACCAAAATGCA
AACTTAGCTGCTGTCTCTGAAACCACATGTCTTTAAATCTCCCGATTGTT
AACATTTATTCCCAAAAGAAGTCTTAACTTCCACTAGGAGATAAATAGAT
TTTGGAATTATATTTCCTCCTACCTTGAAACCTAACCGACCTGTTAAAAG
CTTAAATTAGCGTAGAAAAATCACAACATCCTCCAACAGCTTGACTGCAT
GGTACATAAAAAATCACAACAGTATATATCCAATAAGAGGCTAGGATATA
TTTAAAATTAGATAAAATCATTTGGAAGAACACAGATGTAATGTCATCTT
GTTTTTTTTCCCCCTGCGAAAAGCATTCATCCCGAAGAAAAAAAGGAGCG
GTCTACCTCATGTAAGCCGCATATCCACACGGCAACTTTGTGTGGAGTTA
AACTCTGGAATTACTTGTTTATACAAGAAAACTCATCTCATATGCAGCAT
CTGTTTCTCACTAGGGCTTAGCTTTCACCTAATTCTCCAAATGGGTTGAC
TGAGGTTCAAGAATGTGAGGTGACTCGCTCAAGAGCACACAGTGAATCCA
GGGTGAGCAGCCACTCTCCCTCAGCTAGGAAGTAGATAGCCATCTCAGTG
CAAAACCCCTCTGATGCTGAGAACTCTGAGTACTTAGCTCCACGTGGAAA
GCATAGCTCTTTGAATGAATCACTTGGTATCTTTCCACTTTACAGCATGT
CAGAAAGTGGACTACAGAAAACTACCATGAATTTTAAATACGCTTAAAAC
AGTTTCTTTATTAGGAAAAAAATACCAAATTATATGGTTGACTCAGGAAA
TTTTTATATCATCAACTCAAAAACTCAAGTATTAATCCACAGGTTAAAAA
AATTAGAAATATGGGTATGTGAAATATAATTATATATTACTACTCCCCTA
TTTTTTTTTTTAAATATAAAACTTTCCTCTTATGAAAAATTTTTAAAAAT
TTTTTTATTTATCCCATTATTTTATTTTTTAAAAAAATTTTACCATTTGT
TCTTAAACAAAAAATATTTATATATAAATCCTGTCGTTATAATTTTCTTA
TAAAATTTTTTAA
NNCCCATGATGGTAGGCTGGGGCGCCGGTXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAATGTCACTACTTCCCAGCTGCATGACATT
AATCACATGGTACAACTTCACCAAGCCCCTCCGAATTCACTTTCCCCATA
TGCCAAAATGGAGCTGAAGGCCCTTCCCCAATGGCTTATTCTGAGGATTA
AGACTTAGAATATGTAAATGTACTCAAGACTTTGAGGTTTGGGGCTCTAG
AATACTTGATGAGCCAACAGAGCATTTTCAACTGCTTTTTGGTTGTTTTG
AACAATTAATCGGTTTATGACTATTGTGAAGTTTTGTCACTGAATTTCTC
TAGCTTTAAGTATTGTAGATAAAGCTAAAATGAGTATCTTTGTGTCTAAT
ATTGTAAATTTATTAATGATGCTCTTCACTTTCCACAAATACTTATTATT
TTTTTTTCCCCCCCCCCGAAGAATAACTGGTCCAATTCAAAAAGAATTAT
TCCTGGAATAAACAATACTTTATTTCCTTGCACATTCCAGAATACTGTTT
AGGCTCCAACTGTATTAAATAGATGAAAAGTTGAAACCCTAAATTGTTCA
TCTTCCAACATTTTCCGGCCTGTGATATATCTTTGGATCAGCAATAATTG
CCTGGACAGCTATAATAGCTTCATTAATTTTTGTTTGTATTCTGTGTTCT
TTATTCAGAGATGGAAGAAATGCTTCTTCTGTGTCAGAATCTAAATGCAT
TTGTCTAAACCTAACTGTCTCTGATTTAACATCCTGATCTGAAATCCCAA
CCATAGTAGAGACTTCTGTGAAAGTTCTGGTAAAATAAAATTGAAATTTC
ATCTTAACCATTATGCCAGCTTCATAAACCAGGTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTTTCTTTTCTTTTTTTTTATTTTTTTTCTTCTTCT
ATCTATACTTCTTCTTCTCTCTATTTTTTATTCTTTTATTTTCATATTTC
ATCTCTTTTTCTAAATATCTATTTTTTCTTTTTTTCTCTTTATATTTTTA
TTTTTATATTATTTTTTTTTTTCTTAGCTTCCTTCTTACTTTCTCCTTTA
ATTTTATCTTCTATTATATTTATTTATTTTATTTTATTTTTTCTTTTCTT
TATCTTCCTTTTACTTCTTATATGTTTTTCTATTTTTTTATTCTCAATAT
CTTATCTATTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_f08.b1 MSMg01no207_f08.b1 CHROMAT_FILE:
MSMg01no207_f08.b1 PHD_FILE: MSMg01no207_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:08 2005
         (321 letters)



>mm_chr13_119639005_119639725
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaattaaaccaaaatgcaaacttagctgctgtctctgaaaccacatgtctttaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaattaaaccaaaatgcaaacttagctgctgtctctgaaaccacatgtctttaaatc 260

                                                                       
Query: 61  tcccgattgttaacatttattcccaaaagaagtcttaacttccactaggagataaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccgattgttaacatttattcccaaaagaagtcttaacttccactaggagataaataga 320

                                                                       
Query: 121 ttttggaattatatttcctcctaccttgaaacctaaccgacctgttaaaagcttaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttggaattatatttcctcctaccttgaaacctaaccgacctgttaaaagcttaaatta 380

                                                                       
Query: 181 gcgtagaaaaatcacaacatcctccaacagcttgactgcatggtacataaaaaatcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtagaaaaatcacaacatcctccaacagcttgactgcatggtacataaaaaatcacaa 440

                                                                       
Query: 241 cagtatatatccaataagaggctaggatatatttaaaattagataaaatcatttggaaga 300
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 441 cagtatatatccaataagaggctaggatagaattaaaattagataaaatcatttggaaga 500

                              
Query: 301 acacagatgtaatgtcatc 319
           |||||||||||||||||||
Sbjct: 501 acacagatgtaatgtcatc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no207_f08.g1 MSMg01no207_f08.g1 CHROMAT_FILE:
MSMg01no207_f08.g1 PHD_FILE: MSMg01no207_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:08 2005
         (381 letters)



>mm_chr13_119722883_119723663
          Length = 781

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtcactacttcccagctgcatgacattaatcacatggtacaacttcaccaagcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 740 caatgtcactacttcccagctgcatgacattaatcacatggtacaacttcaccaagcctt 681

                                                                       
Query: 61  tccgaattcactttccccatatgccaaaatggagctgaaggcccttccccaatggcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccgaattcactttccccatatgccaaaatggagctgaaggcccttccccaatggcttat 621

                                                                       
Query: 121 tctgaggattaagacttagaatatgtaaatgtactcaagactttgaggtttggggctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgaggattaagacttagaatatgtaaatgtactcaagactttgaggtttggggctcta 561

                                                                       
Query: 181 gaatacttgatgagccaacagagcattttcaactgctttttggttgttttgaacaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaatacttgatgagccaacagagcattttcaactgctttttggttgttttgaacaattaa 501

                                                                       
Query: 241 tcggtttatgactattgtgaagttttgtcactgaatttctctagctttaagtattgtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcggtttatgactattgtgaagttttgtcactgaatttctctagctttaagtattgtaga 441

                                                                       
Query: 301 taaagctaaaatgagtatctttgtgtctaatattgtaaatttattaatgatgctcttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaagctaaaatgagtatctttgtgtctaatattgtaaatttattaatgatgctcttcac 381

                              
Query: 361 tttccacaaatacttatta 379
           |||||||||||||||||||
Sbjct: 380 tttccacaaatacttatta 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)