Query= MSMg01no207_n10.b1 MSMg01no207_n10.b1 CHROMAT_FILE:
MSMg01no207_n10.b1 PHD_FILE: MSMg01no207_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:16 2005
(302 letters)
>mm_chr13_40833110_40833811
Length = 702
Score = 505 bits (261), Expect = e-147
Identities = 281/295 (95%), Gaps = 14/295 (4%)
Strand = Plus / Minus
Query: 16 gaattccttaggcc-acgcgcatgcgtcggcaggtagcaacctagctctttatgaccagg 74
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattccttaggccaacgcgcatgcgtcggcaggtagcaacctagctctttatgaccagg 551
Query: 75 tgagatgttggtgagcaggt-------accccccaaaaaaaaaaaaaaaaaaaaggattt 127
|||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 550 tgagatgttggtgagcaggtaaaaaaaa------aaaaaaaaaaaaaaaaaaaaggattt 497
Query: 128 gtctaagcgattccagggagcgggcccggctgagccctctagcccatgcccggcggggac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtctaagcgattccagggagcgggcccggctgagccctctagcccatgcccggcggggac 437
Query: 188 ccgtcgccaggagcgccgagccgcgatgtccatacttgccaaaatgggggactggcaggt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccgtcgccaggagcgccgagccgcgatgtccatacttgccaaaatgggggactggcaggt 377
Query: 248 acgggggtttgccttggctggggctgaggtgggcgggggtggagcggaggagggg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acgggggtttgccttggctggggctgaggtgggcgggggtggagcggaggagggg 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_n10.g1 MSMg01no207_n10.g1 CHROMAT_FILE:
MSMg01no207_n10.g1 PHD_FILE: MSMg01no207_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:17 2005
(380 letters)
>mm_chr13_40664618_40665397
Length = 780
Score = 667 bits (345), Expect = 0.0
Identities = 371/385 (96%), Gaps = 10/385 (2%)
Strand = Plus / Plus
Query: 1 cacagatgtgaggtccagattatggaaaggaacaagaagacttgtttgaggaagcccccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagatgtgaggtccagattatggaaaggaacaagaagacttgtttgaggaagc----- 255
Query: 61 -----gaccaaaagagctgataaataaccctggaagcaggaaatgggaaaaagtggaaca 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agtaggaccaaaagagctgataaataaccctggaagcaggaaatgggaaaaagtggaaca 315
Query: 116 cgcctctaaacgcagtttgttccacttgcattcctcaccaactgtagaggtcacctagct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgcctctaaacgcagtttgttccacttgcattcctcaccaactgtagaggtcacctagct 375
Query: 176 acacaatgtgtcagcaggctcactctggcttgactgcagagaatacctttgacgtgtggg 235
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acacaatgtgtcatcagactcactctggcttgactgcagagaatacctttgacgtgtggg 435
Query: 236 tgccaatggacagttgcctaagctagtttgcaggaattcagaggctgctttgtgtgtagc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgccaatggacagttgcctaagctagtttgcaggaattcagaggctgctttgtgtgtagc 495
Query: 296 tctaatcagtgttaattaccaacctcttcacgtggttctgtacaaggacatggtgggtga 355
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 tctaatcagtgttaattaccaacctcttcacgtggggctgtacaaggacatggtgggtga 555
Query: 356 gctctgcacgtcagagcagaagcca 380
|||||||||||||||||||||||||
Sbjct: 556 gctctgcacgtcagagcagaagcca 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
