BAC Information

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BAC

Clone NameMSMg01-211I08
Chromosome13 (Build37)
Map Location 21,356,807 - 21,357,001
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211I08.T7 (MSMg01no211_i08.b1)MSMg01-211I08.TJ (MSMg01no211_i08.g1)
ACCAG393208AG393209
length1,2621,313
length of high quality
(start - end)
---195 (111 - 305)
definitionCHROMAT_FILE: MSMg01no211_i08.b1 PHD_FILE: MSMg01no211_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:44 2005CHROMAT_FILE: MSMg01no211_i08.g1 PHD_FILE: MSMg01no211_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCGCATTTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATG
CTTGATCCTGGTTCTCAGCCATATCGTGCTTTTAAAAGCTCTTACCTGTT
ATCTGAATAGCCAAGGTTCCCCAACCCCTACTCCCATCGATCCTTGCTAG
GACACCGCATACTCTTGCATGCCTCGTCGCCGACTGCCGCCCAGCTCATC
AACAATGACTGCCGAGATCTTGAAGCCCGCCCGCCCATACCGTGTCCTGC
ACGCCTTCCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATTGAGGCTCAG
TACCGAGTTGACCCCGAGGCTCTGCTCCGATAGGGGCTTCCACCTCATCC
CCCATCTGACCCAGTGGTGCTGCTACCCTAGTGTCTTCCACCGCATGACT
TTTTTTTCCCCCCCCCTGCAGTAACGCTCGCGCCCTCCACAACAGGAGCG
AGCTGAGCGAGGTTATTCTGCACCGCTAGTGTTTCCCTGCTCACTACCCC
CCTCACACAAGGAGTCTGTCTCCCTAGAGCATTCCACAACCGTACACTGT
TGACCTGGTCCTTCTGCGTTCTCATCGGGATCCGCATCTTCCCCCTTCGA
CCGGTTCGCTCTGCACCTCTTTTGGAATCCTGCGCTCCCAGGCATGCCTA
ACGTGCTCCTTCCTTCCCCGTCCACTGGTCCCTATATACTATTGCTGGAT
TCTGGAACGTCAATTTCTCCCATGACTTTCCGAACCCGATAAGATCCCCG
TTCTTGCCCCGTATCTCCCTGCATATCCAACCAGTGCGATGACAGGATTT
TAAACCCCCATGCTCCTCGACCGCGATTACAACTGCTCTCGTCACCACCT
CATACTAGATTCCTCCTGCCGATACTCCGCTTATGCCCTCCTCCCATAAC
CCCCGAACATCTGGTCCTGTGTCACAGGTTCCTGGGCACTTCTGGCCTCT
TTTGTGCTTCCGTGCCCAGCCTACCCTCTTTCCGTTTGCCCATAACTTCG
GTTTCATCTTTCGCCAACCCTACTCGTAGCGTATTTTCTATCCCCTCTCC
TATTGTTTTCTCTCTGCTAACATAACATCTCCTCTTCCCATGATCCACCG
CCTTTCATCTCTCTCCTCTGAACTTATTACTCCGTCCTCCTCCTTCCCCC
CTAAGCGGCTTCCTCTTATTTCTCCTCTCCTGGTTATACCTTCATCCTCT
TTTTACCTTTCC
NNTTGGTGCACGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCTAGAATGCAGAAGGTCCTGAGTCTGAT
CACCAAGTCAGCATCAATGAAAAAGAACAAAGAGAAAGAGGAAGGGAGGG
AAGGAAGGAGGAAGAGGAAAAAAGATGTGAACAACAGTTCCTGGAAAGAG
CCGGTGCCTTCCCACTGAACCTTCTGCAAGGCTGATTAGCGCTTCCCCTG
CAGGTGTGCATAGTAATGCTTACTTTAATGAGTACTCCTGTAGAGAAAAG
ACACAAAATGCCCTTTGGAAAGTGTCCAGTAACCTCTGAGTATTTTTTTC
ATCTATTGTGAGTCAAGTAAGACTGCTTATTGAGAAGTCAGTAAAGTTTT
TTTTATGGATTAAATTGAAACATTTCCAATTTTCTCATAGAAATTCTTTT
TTTTTTTTCCCCCCCCCCCAAGAAACCTCCCCCCCCCAAAAAGGGGGGGG
GGGTTAATTATTGTTTNAATATACCTGAATTTCCTCGTGACCTCCTTATC
TATGACTTCTGGTTAACACTGCTGGTTTCCAACGTGTAATCTGGCCCCCC
TGTCATTTCCAACCCCTTCATTTCCTGTTTTCGACACCGCCGCTTTTCCC
TACTCTCCCTTCTTCGCCCCCCGCATAACCCTTTCTTACCCCTCCTTTCT
TTTCTCCTTCTCCTGTCCTACCGCTCTCTCTCCCCTCTTGGTGCTTTCTC
TGTTCCTATTCCCCCTGTGACTCCCATTTTCTTTGACTCCCTTTTCTCCC
TCTCCTTCTCTCATCCCTCCTCCTTCTTTTCTTCTCTGTCTCCTTATCTT
TTCTCCCAACCCTCCTTTCTTCTCTTTTCCTCTCTTCTTCCCTTCTTTTC
TATCCTCTTTTCTTCTCCCTCTTCCCTCTTTTCTCTTCCTTCCTTTTTCT
CCATCCTTCTTTTCCTTCCCCTCTCCCTCCTCTTTCTTCCCCTCCTTCCA
TCTACCCTTCCCTCTCTCCCTCTCCCCTCTCCTCTTCCCTTCCTCCCTCT
TCTCCTCCTCTCTTCTCTCTTTCCTTTCTCTTCTCTTCCTCTTTTTCTTT
TCCTCCTCCTCCTCCCCTCCTTCCTTTCTCTTCTTCCCCTTTTCCCCTCC
CCCTTCCCTTCTCTTTCCTCTCCTCCTCTTTCTTCTCATTTCATCTTTCC
TCCTTTTTCTTCTCTTCTCTTCTATCCTTCCCTCTCACCTTCTCCTTCTT
TTCCTTCTCTCTTCCTTCTCTCCTTCTCTTCTACTCCTTCTTCTCTTATC
TTCTTCTTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_i08.g1 MSMg01no211_i08.g1 CHROMAT_FILE:
MSMg01no211_i08.g1 PHD_FILE: MSMg01no211_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:44 2005
         (195 letters)



>mm_chr13_21356543_21357137
          Length = 595

 Score =  339 bits (175), Expect = 9e-98
 Identities = 190/195 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatcaatgaaaaagaacaaagagaaagaggaagggagggaaggaaggaggaagaggaaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 459 gcatcaatgaaaaagaagaaagagaaagaggaagggagggaaggaaggaggaagaagaaa 400

                                                                       
Query: 61  aaagatgtgaacaacagttcctggaaagagccggtgccttcccactgaaccttctgcaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 399 aaagatgtgaacaacagttcctggaaagagccggtgccttcccactgaaccttctgcagg 340

                                                                       
Query: 121 gctgattagcgcttcccctgcaggtgtgcatagtaatgcttactttaatgagtactcctg 180
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctgattaacgcttcccctgcacgtgtgcatagtaatgcttactttaatgagtactcctg 280

                          
Query: 181 tagagaaaagacaca 195
           |||||||||||||||
Sbjct: 279 tagagaaaagacaca 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)