TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATACATTCTACATTAATTTCCCCCTTCTTAATACTCTTCTTATA
ATCCTCTCAATAAATAACTTCTAACATAATATATGGAATAACTTCTAATA
TACAAAGGTAACATTTTAGGACCTTTTGACATACTGCCCTCTCAGTATCC
AGCTGTCTGACTGTCACACATGTACAAAGAATCTTCATGATTTCAGATCC
TGCCTTCTGAATTCTCTCAGTTTGTTCACTGTCCAATTGTGTTTACATCA
CTGCAGTAGCCAGTGGCTCTCATGGCTTTGGTCTTATTAGTCCTCATATC
TGTAACCTTCATAATAATGCACCTCAGCACAGATCCCCATGGTGCTGTAG
TCTTCAGTAGACTCAACATCTGCTTTGGAATGTCTTAGTTCAGCGAACAA
AGCCTTGAACATGTTGGCTTCTGCTTACTGATCTAGACTCTTCTTTTGTA
ATTCTGCATCTGTGTCCCCTTGCAACAAACACAGGACTCTAATGGATTAC
TCTCTTCAGATGCCATGGCTTATCACACGTCACTTCAGACTTCCCAGAAG
ACGCTTCACTGCCCTCACTAAAGCCATCTGAAAGGAAAGTTCCCTGTCAC
CTTATCTTGAATAGCAACTTGGAAACACATCCTGTCTGCGATGCTGTGAA
GTCTTAAGAAACGGACAAAGTGGCTAATATTACN

TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTCAGAAACACAGCCTCTGTAAGCA
TATAACGCTACTTCTATGGTTTACTGCTAACATTTCCCAAAGAGACCAAT
AGCCAAGAATGGATACAATCTACCTTTCTTGAAAAGTGACCTGTACTTCT
CTTGTTTATATCTCAGAATTTCCATGGTTACCTTCTTAGCTTGCTGTGGC
AATAATTTGATCAGTTGCTATAAGCCTTATTAAAGGTTTGAAAATAAATT
AAAAGGTGGTCTTCGGAAGACTTTTTATCATGACACTAATGTGATGATTT
GGTCACAAAGTTATTATGCACCGCCCCCCCCCCCATGGGAAAATACAAAT
GCCCTCAGAACACTGTTAACAAGACAGACAACCTGCTGAAAGAAAGGAAA
AGAGTTATTTACATAATTTTAGATATCAGAGCATTTGATAAGTGGATATT
TCTGAGCCCTGCTTCTTCTACTCAAAAGAATTTACTGACACAAATATGAT
TTTCCTCTTAGATTTTCTTATATAAACATATTCATAGAGTTTAATCTAAT
GCTCTCATAATTGGTTATTTTGTAAGGAAATAGAGCGGACTTCTCTCTTA
GGAACACAATGGTTGCTCTATTGTTCAAAAAATTGATGTGATATATGCAT
ATGGAGAAGCCTTCTGGGAGAAGTCCGTGTGTGA

Query= MSMg01no211_p14.b1 MSMg01no211_p14.b1 CHROMAT_FILE:
MSMg01no211_p14.b1 PHD_FILE: MSMg01no211_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:36 2005
         (644 letters)



>mm_chr13_42787631_42788674
          Length = 1044

 Score = 1151 bits (595), Expect = 0.0
 Identities = 628/639 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatacattctacattaatttcccccttcttaatactcttcttataatcctctca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaattcaatacattctaaattaatttcccccttcttaatactcttcttataatcctctca 784

                                                                       
Query: 65  ataaataacttctaacataatatatggaataacttctaatatacaaaggtaacattttag 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 783 ataaataacttctaatataatatatggaataacttctaatatacaaaggtaacatcttag 724

                                                                       
Query: 125 gaccttttgacatactgccctctcagtatccagctgtctgactgtcacacatgtacaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaccttttgacatactgccctctcagtatccagctgtctgactgtcacacatgtacaaag 664

                                                                       
Query: 185 aatcttcatgatttcagatcctgccttctgaattctctcagtttgttcactgtccaattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aatcttcatgatttcagatcctgccttctgaattctctcagtttgttcactgtccaattg 604

                                                                       
Query: 245 tgtttacatcactgcagtagccagtggctctcatggctttggtcttattagtcctcatat 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 603 tgtttacatcactgcagtagccagtggctctcatgtctttggtcttattagtcctcatat 544

                                                                       
Query: 305 ctgtaaccttcataataatgcacctcagcacagatccccatggtgctgtagtcttcagta 364
            |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 543 gtgtaaccttcataaaaatgcacctaagcacagatccccacggtgctgtagtcttcagta 484

                                                                       
Query: 365 gactcaacatctgctttggaatgtcttagttcagcgaacaaagccttgaacatgttggct 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gactcaacatctgctttggaacgtcttagttcagcgaacaaagccttgaacatgttggct 424

                                                                       
Query: 425 tctgcttactgatctagactcttcttttgtaattctgcatctgtgtccccttgcaacaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctgcttactgatctagactcttcttttgtaattctgcatctgtgtccccttgcaacaaa 364

                                                                       
Query: 485 cacaggactctaatggattactctcttcagatgccatggcttatcacacgtcacttcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cacaggactctaatggattactctcttcagatgccatggcttatcacacgtcacttcaga 304

                                                                       
Query: 545 cttcccagaagacgcttcactgccctcactaaagccatctgaaaggaaagttccctgtca 604
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttcccagaagatgcttcactgccctcactaaagccatctgaaaggaaagttccctgtca 244

                                                  
Query: 605 ccttatcttgaatagcaacttggaaacacatcctgtctg 643
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 ccttatcttgaatagcaacttggaaacacatcgtgtctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no211_p14.g1 MSMg01no211_p14.g1 CHROMAT_FILE:
MSMg01no211_p14.g1 PHD_FILE: MSMg01no211_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:36 2005
         (290 letters)



>mm_chr13_42748196_42748885
          Length = 690

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcagaaacacagcctctgtaagcatataacgctacttctatggtttactgctaacat 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||
Sbjct: 201 aggtcagaaacacagcctctgtaagcatataacgctacttctctggtttacccctaacat 260

                                                                       
Query: 61  ttcccaaagagaccaatagccaagaatggatacaatctacctttcttgaaaagtgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccaaagagaccaatagccaagaatggatacaatctacctttcttgaaaagtgacctg 320

                                                                       
Query: 121 tacttctcttgtttatatctcagaatttccatggttaccttcttagcttgctgtggcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttctcttgtttatatctcagaatttccatggttaccttcttagcttgctgtggcaat 380

                                                                       
Query: 181 aatttgatcagttgctataagccttattaaaggtttgaaaataaattaaaaggtggtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttgatcagttgctataagccttattaaaggtttgaaaataaattaaaaggtggtctt 440

                                                          
Query: 241 cggaagactttttatcatgacactaatgtgatgatttggtcacaaag 287
           |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cggaagactttttatcatgacactaatgtgatgattcggtcacaaag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)