BAC Information

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BAC

Clone NameMSMg01-212P02
Chromosome13 (Build37)
Map Location 64,321,962 - 64,322,274
singlet/doubletsinglet
Overlap geneCdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212P02.T7 (MSMg01no212_p02.b1)MSMg01-212P02.TJ (MSMg01no212_p02.g1)
ACCAG394114AG394115
length745746
length of high quality
(start - end)
317 (46 - 362)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no212_p02.b1 PHD_FILE: MSMg01no212_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:51 2005CHROMAT_FILE: MSMg01no212_p02.g1 PHD_FILE: MSMg01no212_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTCTGCAAGACACTCACCTTCTTTACTGCGTGAAAACAGTCG
AGAAGTGTAATATAGAAACTGCCGCTTCCATAGGCAGCATCTCTGAAATT
CCCAAAGTGTTACTCCGTTAATGTTCTACACCACACTCACCCCAAGAAAA
AGCTGACTAGAATTCAAAACCAAACTTGCTTCGATAATCTGTTCACTACA
GAAACAAGCATTCTGCTCCCATAGTTATAGTAGAACTTTGAATAAATTTA
ACTGGGTAACCTTTTCCTGTTCTTAAGGGTTAGAATTCCAATAGCATCCA
GTAAAATCACTCTTTATCCCACCCCGCTTATAACTACAAAACAGATAGTT
CCACTCAAATACTGTATCGGCCCTATCAGCAATCAACAGAGAGTGAACTC
TCAAACTGAAGTAATGCATAACTTTGAAAGTAGTTAACTACTTGCATTAA
CTTCTTAACATGGCCAACACTTCTCCAACTTAGTTAACCTAGTTAAAGGC
ACACCAATTCAACCATGCAAAGAATTTGATGCCATAGATTTTTTTTTCCA
AGAATAATAATGGCTCAAGGCCTACTTTACTCAAGCCCTGCCTTACACAA
TCCTAACATAAAAGCTTGCTTCTTGAAGATCCAGGCCCCCAACACATCCC
AGGCCTTCCCACTGGAGCCATAGGGAATCATCCTCAATTGCTCCT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAAAGCTATAACCGGGA
GACTCTGTCTAAAAAAGAAAGCCTCCTGGTTTTGGCACTTGCGCAGGAAG
TGAAGGGGATCTCTGAGGAGGCCAGCTTGGCCTACTGAGCAGGTTTCAGG
ACAACTGAGGCTACACAAAGAAGTAAAAAGGAAAAAAAAACCAAACAAAC
CTAAAAAGTGGAGAGAAGTACCCAAATTACATCTCTTAGTAACCAACCCC
AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAATAAAATAATTTATAATACCCCCCCCCCAGTCTGAGAACCCAAGTTC
AGTCCCTGGGACCCACATGGTAGATGGAGAGAACCAACTCTCACAAATTG
TCCCCTGACTTCTACATGTGTATGATGGCCCATGCATGTGCAACTCATAG
AAATACAAAATAAATGAAGTTATTGATAAACAAATAAATAAATGGCACCA
AGAACCTGGAGACACCTGGCCCAGACCCCGACCACCAGTTACGCTTGCTT
GGGTCAGACTATGTATTTTATACTGAACTCTTACTTTGCATTTCAGCTAG
CATCTTAACAGTGAACCCCAAGAAACAATACCTTCCCTTATCAGAAAAAG
ATTGGTTCTTCAAAGGCATGACTTCTTCGTTAGAGCATGTAGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_p02.b1 MSMg01no212_p02.b1 CHROMAT_FILE:
MSMg01no212_p02.b1 PHD_FILE: MSMg01no212_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:51 2005
         (317 letters)



>mm_chr13_64321758_64322474
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcttctgcaagacactcaccttctttactgcgtgaaaacagtcgagaagtgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcttctgcaagacactcaccttctttactgcgtgaaaacagtcgagaagtgta 264

                                                                       
Query: 65  atatagaaactgccgcttccataggcagcatctctgaaattcccaaagtgttactccgtt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatagaaactgcagcttccataggcagcatctctgaaattcccaaagtgttactccgtt 324

                                                                       
Query: 125 aatgttctacaccacactcaccccaagaaaaagctgactagaattcaaaaccaaacttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgttctacaccacactcaccccaagaaaaagctgactagaattcaaaaccaaacttgc 384

                                                                       
Query: 185 ttcgataatctgttcactacagaaacaagcattctgctcccatagttatagtagaacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcgataatctgttcactacagaaacaagcattctgctcccatagttatagtagaacttt 444

                                                                       
Query: 245 gaataaatttaactgggtaaccttttcctgttcttaagggttagaattccaatagcatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaataaatttaactgggtaaccttttcctgttcttaagggttagaattccaatagcatcc 504

                        
Query: 305 agtaaaatcactc 317
           |||||||||||||
Sbjct: 505 agtaaaatcactc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)