BAC Information

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BAC

Clone NameMSMg01-213C08
Chromosome13 (Build37)
Map Location 119,274,881 - 119,275,175
singlet/doubletsinglet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30
Downstream geneLOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C08.T7 (MSMg01no213_c08.b1)MSMg01-213C08.TJ (MSMg01no213_c08.g1)
ACCAG394242AG394243
length740759
length of high quality
(start - end)
322 (33 - 354)295 (60 - 354)
definitionCHROMAT_FILE: MSMg01no213_c08.b1 PHD_FILE: MSMg01no213_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:06 2005CHROMAT_FILE: MSMg01no213_c08.g1 PHD_FILE: MSMg01no213_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTTTAA
GATTATACTAAGATGAGATTGGTAGTATCACTACCCTGTATTCTTTTTCT
TTACAAGGGCATTGGCTACTTTTTTTCTTCTTTGTATAAACTTTGAAATC
ATCTTTTAAACATCTCATACACAGCTCACTGGAATTTTGATTGTGATTAT
TTTGAATCTTCATATCATTTTACATCATGACAATATTGATTATATATGTA
ATATTTAATCATTCTCCACTAATGTAACTAATATTATTAATACATGCAAT
ATTCTCCATATTGTTGACTCATCTTACTAATTCGATATACAGAAAAGTGC
TATTTTTATATATCTCATGGCTCCTATTTTAAGAGATTGTATTTAACTTA
TATGAACACGCCACCTATGGAGATAATATATATTATTAAATTATATGAAT
ACAGATCTATTTTGAATAAAAATTGGGAATTCAGATATAAGAGAAAATGT
GGAGGTTTTCTTCTTTCTCTTGGTCTCAGTTTTTGTGCATCTGTTTTTGT
TTGTTTTTATGTTTGTGTATGTCAAACATCTATTAGCTTTCTTTTTTATT
TTTGATTGTGACCTTTGCCTTTAAAAACTGAGCTATTTTTCCAGCCCTCT
ATTAGTTTTCTCTAAAGCTAACTGTGTTGTGTCTGTAAAATTGAAAAATA
ATAATAAATTTGATTTGTTACCTTTCCTAACACTTTAGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTTCCCAGCATGGCTGTAATTTGGACGGAGTTGAAGTACT
TACTCAGCAAAGGTTGGCTCTCTCTAGTAGCTTGTTTCCTTCTAGTCCAA
TACACGTGGTCACCCGTTTTCACACAGTGTAAATCTTCCGAGTGAATAGA
TTTTCTAAATGAGAGTTGGAGTCATGAATCACTGGAAGAGTTTAAAAACA
TTCTCACTAATCTGGAATTTGTAGGATTCAAGCAACAGAGCTTTGCTAGG
GGGGAAAGGCTATGGTTTGACAAGACAGATGATTTGACCTGAGAAAAATA
CTTATGTTAATAAACTAACACGCTTGGATAAATACTCTATCAATCATTCC
AAAAGCCCACACCATACACACCATGGACACAGTACCCTTGTGTGGAAGTG
CTTTCTGGGCCTTATGATCAGCATTGCACACTGTTGAGAGATTTCATGTG
TAAAAACAAATCCAATATGTCTAAAAGGGTAAAAGGGGAAGGGGATCAAA
TTATGATTAATTTTTTTCAGTATAATGTGACAGTTTAAGATGACACTTAC
CCATCTTTAATTTCTTAAATGCTTTATGATAAATATTGAAAGCCTAAAAG
GTCATTTTGTGATTTCAACAGCGCGATTTTCTTTTTCCTTTCTATCTTTT
CCTTCCTTTCTTTTCCTTTCTTTTCATTCCATTCTATTCCAATCCATTAC
TCTCCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c08.g1 MSMg01no213_c08.g1 CHROMAT_FILE:
MSMg01no213_c08.g1 PHD_FILE: MSMg01no213_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:06 2005
         (295 letters)



>mm_chr13_119274681_119275375
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcccagcatggctgtaatttggacggagttgaagtacttactcagcaaaggttggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcccagcatggctgtaatttggacggagttgaagtacttactcagcaaaggttggct 260

                                                                       
Query: 61  ctctctagtagcttgtttccttctagtccaatacacgtggtcacccgttttcacacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctagtagcttgtttccttctagtccaatacacgtggtcacccgttttcacacagtg 320

                                                                       
Query: 121 taaatcttccgagtgaatagattttctaaatgagagttggagtcatgaatcactggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcttccgagtgaatagattttctaaatgagagttggagtcatgaatcactggaaga 380

                                                                       
Query: 181 gtttaaaaacattctcactaatctggaatttgtaggattcaagcaacagagctttgctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttaaaaacattctcactaatctggaatttgtaggattcaagcaacagagctttgctag 440

                                                                  
Query: 241 gggggaaaggctatggtttgacaagacagatgatttgacctgagaaaaatactta 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggggaaaggctatggtttgacaagacagatgatttgacctgagaaaaatactta 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)