BAC Information

Click to search

BAC

Clone NameMSMg01-213F08
Chromosome13 (Build37)
Map Location 51,386,470 - 51,523,949
singlet/doubletdoublet
Overlap genePpia-ps13_636.1, LOC625524, Edg3
Upstream geneLOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733
Downstream geneShc3, Cks2, Secisbp2, Sema4d, Gadd45g, LOC100040321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F08.T7 (MSMg01no213_f08.b1)MSMg01-213F08.TJ (MSMg01no213_f08.g1)
ACCAG394365AG394366
length781760
length of high quality
(start - end)
222 (43 - 264)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no213_f08.b1 PHD_FILE: MSMg01no213_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:20 2005CHROMAT_FILE: MSMg01no213_f08.g1 PHD_FILE: MSMg01no213_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,386,470 - 51,386,686)(51,523,666 - 51,523,949)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGGCAGGCAGATGGCTGCATCCTCCTGCTCTGTAGTCAAGGAAGTCC
CCGTGAGACTGGGTGTCACCTGCAGTACAGTCCATCCTGCTGAGTCTTGT
CTTGTGTGGGCTGAAGGAGGCCAAGATCTTCGAGGTCCTGGCTTTGGAAG
CAGGACTGCGTGTGCCTTACTTTATTTATTAAGTGGTGTGTGGTTCATGC
ATGTGCTGATGGCGGTGGTGAGGGGGATGAGTGCAGCATTTTGTGTCCTG
TCCGTTCACTCTTACTTTTTTTTTCTTCTCCGCCCTGCTCTCTTTCATTC
CAGAAATTTAAAGTACCTTCCCGGAGCTGAATCCCCGTTTTTTTATTTCA
TCCACCCTATTCTCTTGCTGTCCCCCCCAAACAAAAAAAAAAAATACCTC
TGTGGGTGCGTGCCGCCCGCACTTCCCCCTCTATTTTTTTTTTTTTTTCT
TTCCCCCCTTTCCACCCCCACTCCTGTGCCTTACATTTTTTATTCCTCCC
TTTTTCCTTCATATCCTCCCTCTTTTTTCCCTCCCCCTTTTCGTTTCGCC
TCGCTTTTTTATCCTTTCTATTCCACTTTTCTTAATCCTCCCTTTCTCCT
TGCCCCCTTCCCATTTTTTCCTCTCCTTTTACCCCCTTATCTCCTTCCCT
TCTCTTTCCTTTCTACCCCTCCCCCCTTTCCCTTCTCTTCATTTTTTCTC
TCCACTGCTTCCTCTCTTCTGCATTTACTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGAAGTCAGTGTTGAGTTTGAGGGTAAT
AAGATTTATAGGAATCAACATTTCTCTTTTTAATTTTAATTCAAAACATC
TAATTATTGTTCCAGATTAGAGGACAGATGTTATAGTTAGGGAAATCTTT
TAGACACAGGGCAGACTGCAGAGGTTGTTCTTGGCAGCCGTGTTCTGGCC
TGCATTCCTTTTAAAGCATGTCAGAGTTCACAGGGGTTCGTCATGTCTTG
CTACAAACACCATGTATGTGATGGGACAACTCCCTCAAACCTCACATACA
CCCGGTTTAAATGATTCTAAATCGAGCCCACCTCGTCTGTTAACAGATGA
GCTGTTCTAGTCTCCCCCCCATTACTAAAAACATGTGTGTCCTGCCTGTG
CTCTGATTGTCCGGGTCTGGGTGCACATTCCCTAGATCTTTTCCTTGTGT
CCATATTGCTCTTCCCTGGTTCCCCAGATTATATTTGCCTGGTTCAGGTC
CGGCTTTTCGTGTTACGATTTCGCATTTCCATATTTGTTCTGAACTGCCT
TTCGCGTTGTCGCTTTCTCGGTTTTTCCTCTTTCCCCCGCATCGGTCGGT
TTGAATTTTCATTTTCTCTGCCTTGATCTCCTTTGGCTTTTTTTGGTCTG
TCATACTTCGTTGGCTTCCTCCCTATTAACACGGCCGCCTCTCTCTTTTT
TTCCGTCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f08.b1 MSMg01no213_f08.b1 CHROMAT_FILE:
MSMg01no213_f08.b1 PHD_FILE: MSMg01no213_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:20 2005
         (222 letters)



>mm_chr13_51386267_51386888
          Length = 622

 Score =  381 bits (197), Expect = e-110
 Identities = 212/217 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgggcaggcagatggctgcatcctcctgctctgtagtcaaggaagtccccgtg 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatcctgggcaggcagatggctgcatcctcctgctctgtagtcaaggaagtccccgtg 263

                                                                       
Query: 64  agactgggtgtcacctgcagtacagtccatcctgctgagtcttgtcttgtgtgggctgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agactgggtgtcacctgcagtacagtccatcctgctgagtcttgtcttgtgtgggctgaa 323

                                                                       
Query: 124 ggaggccaagatcttcgaggtcctggctttggaagcaggactgcgtgtgccttactttat 183
            ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 324 agaggccaagatctgcgaggtcctggctttggaagcaggactgtgtgtgtcttactttat 383

                                                
Query: 184 ttattaagtggtgtgtggttcatgcatgtgctgatgg 220
           |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttattaagtggtgtgtggttcatgcatgtgctgatgg 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_f08.g1 MSMg01no213_f08.g1 CHROMAT_FILE:
MSMg01no213_f08.g1 PHD_FILE: MSMg01no213_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:20 2005
         (284 letters)



>mm_chr13_51523466_51524149
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagtcagtgttgagtttgagggtaataagatttataggaatcaacatttctctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctgaagtcagtgttgagtttgagggtaataagatttataggaatcaacatttctctttt 425

                                                                       
Query: 61  taattttaattcaaaacatctaattattgttccagattagaggacagatgttatagttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taattttaattcaaaacatctaattattgttccagattagaggacagatgttatagttag 365

                                                                       
Query: 121 ggaaatcttttagacacagggcagactgcagaggttgttcttggcagccgtgttctggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggaaatcttttagacacagggcagactgcagaggttgttcttggcagccgtgttctggcc 305

                                                                       
Query: 181 tgcattccttttaaagcatgtcagagttcacaggggttcgtcatgtcttgctacaaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgcattccttttaaagcatgtcagagttcacaggggttcgtcatgtcttgctacaaacac 245

                                                       
Query: 241 catgtatgtgatgggacaactccctcaaacctcacatacacccg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 catgtatgtgatgggacaactccctcaaacctcacatacacccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)