BAC Information

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BAC

Clone NameMSMg01-214A12
Chromosome13 (Build37)
Map Location 66,997,212 - 66,997,450
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Downstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214A12.T7 (MSMg01no214_a12.b1)MSMg01-214A12.TJ (MSMg01no214_a12.g1)
ACCAG394824AG394825
length728741
length of high quality
(start - end)
239 (128 - 366)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no214_a12.b1 PHD_FILE: MSMg01no214_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:14 2005CHROMAT_FILE: MSMg01no214_a12.g1 PHD_FILE: MSMg01no214_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTGCACTCTACCCAGATAACACAGACCTAGGAGGTCTTCGGATG
TGATCTTTTGCCAGAGCAGTCTTGCTGGAAGATTAAAATTCCTCTATAGG
TCAACATGGCAAAATGGATTAGATAGCTAGCCCCTTTCCTTTAGAAAGCA
AGAATCCCTTTATAACAAGGACTTATTTTCTGCTACTTGATGGCAATGCA
CCTCAGCTTTTCAACTTGAAGGTATATTTCCCTGGGGGAGATTTATCCAT
TTTGTACCTTCATTAATTTCCCTCTCCATCTTTCAGGATGACAGCACCTT
GCTAGTTTATGCCCATCTGTAGAATTTACTGCTAAGCTATATACTGACCT
AATAAAATCTAATATACGCTGCTATTTAGTTTGAGTATTTTATTCAATCA
TGTCTGATCATATTTCCTTTTTATGATTGCTCACTCTTTAATCATGCCAG
ATGACTGTACATGAAACAATAAAGTACATATATATTAAAATATAAATGCT
TTCATTGATTTGCTATAGTTAGTTAAACAGACGATTATATGTTGAACTTT
AATTATATGTCTTGGGCCTATGTGACCCAAGGTCAACCTCTAGAACCCAT
TTGGTGGAAGGAGAGAATCGACCTACNAGTTGTCTTCAAACCTCCAACTT
TAAAACTGTTTATGCTCACAGTTTCACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAAAGGTAAAGACATAGTTT
TAAAAAGCATGTACACCACTGCATTTGAAATTCTAAGAGATGGATAATTT
ACTCAATAGGTTCCACTTATCAAATTAAATCAAACTAAGATAAGCAACTT
AAACAGACCTAAAAACCTAGAAAAAGAGAAGTCATTACAAATCTGCCACC
AAAAAGACCTCAAGGCCATAAGTTATGGGGTAGAATCCTAGCAGACTTTC
AAGGAGGAGATAACAAGGATACTCCTCAAAGTATTCAACAATATTGAAAG
AGAAGAAACATTGTTCTGATTCACCCCCGCGAACCCATGGTTACTCAAAT
ATCCAGTCAATAAAGACTCACCAACAAAAGAGAATTGCAGACCAACTTTC
CTTAAAGTGACTGACACAAAAACACTTTATAAAGCAAAACAAGTAAAAAA
AAGAAAGAAAATAGAAAAAAATATCAAAAGCTCATCCCCCATGATCAATG
AGGTATGCTTCATTAAATAGATGCAGGAATGGTTCAGCAGAAAGTGCTTA
AAGTGTAAGGAAAAAAAAGAAGTGATCATCTCACCAGATGGTGAAAAATT
CTCTGACATGTCCAGCATCACTTTATGATAAAATTGTTGGAGTGATTATG
GATACAGGGGACATACCTAAACATAATATTGTTACTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_a12.b1 MSMg01no214_a12.b1 CHROMAT_FILE:
MSMg01no214_a12.b1 PHD_FILE: MSMg01no214_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:14 2005
         (239 letters)



>mm_chr13_66997012_66997650
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagattaaaattcctctataggtcaacatggcaaaatggattagatagctagccccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaagattaaaattcctctataggtcaacatggcaaaatggattagatagctagccccttt 380

                                                                       
Query: 61  cctttagaaagcaagaatccctttataacaaggacttattttctgctacttgatggcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctttagaaagcaagaatccctttataacaaggacttattttctgctacttgatggcaat 320

                                                                       
Query: 121 gcacctcagcttttcaacttgaaggtatatttccctgggggagatttatccattttgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcacctcagcttttcaacttgaaggtatatttccctgggggagatttatccattttgtac 260

                                                                      
Query: 181 cttcattaatttccctctccatctttcaggatgacagcaccttgctagtttatgcccat 239
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 cttcattaatttccctctccatctttcaggatgacaacaccttgctagtttatgcccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)