BAC Information

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BAC

Clone NameMSMg01-214B23
Chromosome13 (Build37)
Map Location 80,554,796 - 80,555,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B23.T7 (MSMg01no214_b23.b1)MSMg01-214B23.TJ (MSMg01no214_b23.g1)
ACCAG394883AG394884
length815783
length of high quality
(start - end)
237 (70 - 306)399 (130 - 528)
definitionCHROMAT_FILE: MSMg01no214_b23.b1 PHD_FILE: MSMg01no214_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:21 2005CHROMAT_FILE: MSMg01no214_b23.g1 PHD_FILE: MSMg01no214_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACTATGATTCGGGTCTCTGTCTCTTTTGCCTGCACTTGGGACT
CTCCTCCTCCCCTTTGGTATTTATTTCTTTTTGTTTGGTTGTATTTTCTT
TGTTTGTTTTGTTTTCTGTGTCTGTTTCATCTTATCGTATTTATTTTGTC
ATGTTTGTTTTCTCTTAGAAGCCTGTTCTTTTCAAGTGAGTGATAGACAG
TGGACTTGGAATGGAGGGGAGATAGGGAGGAGTCGGGAGGAGTAGAGGGA
GAGAAANTAATACCCAGAATCTATTTTTTTTAACAGGGAAAAATTTGAAA
AGAAGCTTTAGTATTTTATTTTTTCCCCCCCCACTAATTTGATATATCCT
TGCCAAAAACATTTATATTTCCCCTGATATATAAAAAAATACCGTCTATT
ATCTTCATCATTATCACTATTATTGAACTGCATCTGATCATAATCATTAG
CAATATATTATCCCCATGTTACATATTTCACTGACCTCATACTACATCTT
ATATATGCAAATTTTATCTCTCTTTATTTTTCATGTTTTATTTTTTTTAT
AACTTATCTTTTCTTCTATTTTTTATCATTAATCTACATCAATATCGAAA
ATGTTATTGCTCNTATCCTTCATTGTCACAACTCTCTTCTTCTTGTTCTT
TTAACACATTTATTTTTATTCAATTTTGAATAAATATATTATCGTTAAAA
AATATCCAATACACCTGTCTTTAATCACAGAAATAATGTCAATCTACTTC
TCTACCTATTATCTT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCGTCTATCAAACATACAAATCA
ACCAATTCAAACACAGGGAAGTAACCCCGACACCAATAATTAAAGAGAAT
GGGCCAGGACGAGGTGAATATTAAATACAGGTTGATGGATAGCATTGCCA
TTTCTCTTGCAACAAACTTTTTGTAAGTTATTGAGAATGCCACTTTTCCA
GCTACTAAAATCTACTTGTGTTCATTGGCTTCTAAAGATGTTTATATCAA
ATAATTTTTTAAAATTCGAGGAACAACAATATGAACTAACTAGTACCCCC
CAGAGTTGAGTCTCTAGTTGCATATGTAGCAGAGGATGGCATAGTCGACC
ATCAATTGGAGGAGAGGCCCTTGGTCTTGCGAAGATCATATGCCCCAGTA
CATGGGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTAGGGAGCAGG
GTCAGGGGAGGGTATAGGGGACTTTGGTNATAGNTTTTGTAATTCTTATT
ANATTTTTATCCCACTCACACTTGTTAGTTTTTATTATCACTCCTCCTCT
TCTCATACTTTTATCCATTTATTATCTTCCTCATTGTCTACTATCCTTTT
CCTCCCACTTTTTTTTTTTTTTTATTTTTCTCCCCTCACTTTTTTTCCCA
ACCCCTCCTCATCTTTTTGTGCTTACCGCTCACCGCCCCCCACACTCTAC
CTTATTCCATCTCCACTTCCTTACTTCCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b23.g1 MSMg01no214_b23.g1 CHROMAT_FILE:
MSMg01no214_b23.g1 PHD_FILE: MSMg01no214_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:21 2005
         (399 letters)



>mm_chr13_80554596_80555394
          Length = 799

 Score =  731 bits (378), Expect = 0.0
 Identities = 393/398 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccaataattaaagagaatgggccaggacgaggtgaatattaaatacaggttgatgga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 acaccaataattaaagagaatgggccaggacgaagtgaatattaaatacaggttgatgga 260

                                                                       
Query: 61  tagcattgccatttctcttgcaacaaactttttgtaagttattgagaatgccacttttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcattgccatttctcttgcaacaaactttttgtaagttattgagaatgccacttttcc 320

                                                                       
Query: 121 agctactaaaatctacttgtgttcattggcttctaaagatgtttatatcaaataattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctactaaaatctacttgtgttcattggcttctaaagatgtttatatcaaataattttt 380

                                                                       
Query: 181 taaaattcgaggaacaacaatatgaactaactagtaccccccagagttgagtctctagtt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaattcgaggaacaacaatatgaactaactagtaccccccagagttgagtctctagtt 440

                                                                       
Query: 241 gcatatgtagcagaggatggcatagtcgaccatcaattggaggagaggcccttggtcttg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcatatgtagcagagaatggcatagtcgaccatcaattggaggagagacccttggtcttg 500

                                                                       
Query: 301 cgaagatcatatgccccagtacatgggaatgccagggccaggaagcaggagtgggtgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaagatcatatgccccagtacatgggaatgccagggccaggaagcaggagtgggtgggt 560

                                                 
Query: 361 tagggagcagggtcaggggagggtataggggactttgg 398
           ||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tagggagcaggctcaggggagggtataggggactttgg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)