BAC Information

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BAC

Clone NameMSMg01-217H21
Chromosome13 (Build37)
Map Location 6,011,333 - 6,011,620
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H21.T7 (MSMg01no217_h21.b1)MSMg01-217H21.TJ (MSMg01no217_h21.g1)
ACCAG397003AG397004
length718723
length of high quality
(start - end)
---288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no217_h21.b1 PHD_FILE: MSMg01no217_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:04 2005CHROMAT_FILE: MSMg01no217_h21.g1 PHD_FILE: MSMg01no217_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTACGNGAACNCGANNNANN
NNNNNNGANNGTTTACAAAAAAAAAGGGNGNGNGNNNGNNNGNNGNNNGG
GNNNANNNNNNNNNNNNTTGTNAGCGAAAAAAGAGGGGAAANAANANAGA
AGNANNAANNAGAGNNAAAGGGGGGGAGGGGAAGGGNGANNANNGGNAGA
AAAAGAAGGANGGGANGNGNAAGAAGAANAANGGAGAAAGAGGGAGAAAG
ATTTTTTGANAGAGNNGAAAANNGNGNGGAAAGGAGAGAAGGTGATGAGA
TNGTAGGAANNGGAAAATTATAGTAGATTTAANGGGANAGANGAGAAAAG
AANAGAGAGTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAGNAAAAAAA
AAAANNGAGGGGNGGGGNNNNNNAAAAAAAAAAGGNAAAAAAGGGNNNGG
NNNNNGGGNNNNNNANNGANNANNNNGAGAAGGNNGGAANAGAAGGAAGA
AAAAGAGGAGNGGGAAAAAAGGAAGGAAGAGAGGAGGGAAAGGAGGGAAA
GAAGAAGGGGAAAGAAGAAGGGAAGGGGAAGAGGNAAGGGAAGGGGAGGA
AGGAGAGGGGGAAGGAGAGGGAAGGGAGAGAAAGGGGAGGGAAAGTTTTT
TTTTTTTTTAAGAAAAGGAAAGGGGTTTTTTTGTTTTTTTTAAGGAAAGT
TTTTTTATAGGTTGATGT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGCTCCTTTTGAAAACTTTTGACAATACTAA
AATCCAAGAACATTTCTTCCCTATTTATCACTGTTAGCCATTTTATTTCC
TAGTGAGAATTCTTTCTGTCCTTCAAAGACTGCAAGTGCAGAACACGACT
TTGAAATCTCAGGGATTCTGTAAATCTTTCAGATAGAAATGGGAGATGAA
ATGAGGCAGGAACCAAGCATCAACCTTCAGTATTTGCTTTTGGAAAAAGC
AAATACTCTCTCTCTCTTTTTTTGTTTGATTCCCCTATAACCCCTCTTCC
CTTTTATTTATGATATTTACCCCCCCCCCACAATTCCTTTTCCATAAATT
CATATATAACTAAAACCACGCATCTTAACATACCAAATACTCCAATCTAG
CAAAGATAGTTATTGAATAATATGCATACACACATGTGCAATAGCCACAC
ATGTGTGCATATGCATATGTACATACCTATTTATAAACACATATATTGAT
TCCTTCATGCCTCTCACCTTTAGAAAAAATTGTTTACATACAGTTATCTG
TGTATACCTGTCTCTTTACATATACTTATTTGTATATAGAAGTATCCATT
TCTCTGTATTCATCTATTTATTTTCTATCTCTATGNGGCTGGCTGATTAG
CTCTCTAGGAAGAGAGATGTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h21.g1 MSMg01no217_h21.g1 CHROMAT_FILE:
MSMg01no217_h21.g1 PHD_FILE: MSMg01no217_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:04 2005
         (288 letters)



>mm_chr13_6011133_6011820
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctccttttgaaaacttttgacaatactaaaatccaagaacatttcttccctatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggctccttttgaaaacttttgacaatactaaaatccaagaacatttcttccctatttat 429

                                                                       
Query: 61  cactgttagccattttatttcctagtgagaattctttctgtccttcaaagactgcaagtg 120
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 428 cactgttagccattttatttcctagtgagaattctttctctcctttaaagactgcaagtg 369

                                                                       
Query: 121 cagaacacgactttgaaatctcagggattctgtaaatctttcagatagaaatgggagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagaacacgactttgaaatctcagggattctgtaaatctttcagatagaaatgggagatg 309

                                                                       
Query: 181 aaatgaggcaggaaccaagcatcaaccttcagtatttgcttttggaaaaagcaaatactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaatgaggcaggaaccaagcatcaaccttcagtatttgcttttggaaaaagcaaatactc 249

                                                           
Query: 241 tctctctctttttttgtttgattcccctataacccctcttccctttta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tctctctctttttttgtttgattcccctataacccctcttccctttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)