BAC Information

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BAC

Clone NameMSMg01-217N07
Chromosome13 (Build37)
Map Location 46,639,442 - 46,639,644
singlet/doubletsinglet
Overlap geneCap2
Upstream geneGmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217N07.T7 (MSMg01no217_n07.b1)MSMg01-217N07.TJ (MSMg01no217_n07.g1)
ACCAG397222AG397223
length745753
length of high quality
(start - end)
185 (129 - 313)207 (74 - 280)
definitionCHROMAT_FILE: MSMg01no217_n07.b1 PHD_FILE: MSMg01no217_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:37 2005CHROMAT_FILE: MSMg01no217_n07.g1 PHD_FILE: MSMg01no217_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAGGGCAGTCAAGAAGGATCAGCCAGGTGTGGTACTTGGTACTG
CCAACATGGTAACTGGACCACCCCCTGGAAAGGAGAGGGTGTTTGTCTAT
CTTCTTCTTTTTATAATGGAGTTTCACATAGCCTAGGCTAGCTTCCAACT
TTCTATGTAGACAAGGATGACTTTCAATTCCTGATCTTTATGTCTCTACC
CCAATAATGTTGGAATGGCGCATCCATACATACCACACACATCTATTGTT
TTCTTCTTAGGTAGCTCTTGTTTATTGGCCCAAGGTCTTCTTGCACTCTC
AGAGAGCATTCNATACCTTCCCCCAGACCTGACCCAATGTTTTGTTTTGG
TTTGGTTTTAGTTTTGCCACCAAAATTTATGTAAAAAATTCTGGTTTCTC
CCTTATCCTTGTATTTCTCATCTTTTTGCTCTTACTATTCTGTCCCTTAA
CCTTGTCTACTTTTCCGTCCTCTCCACTGTTTCCTTCTTTATGTCTTACT
TCTCCCCTTTCCTTATCTTCTTATTCCCATCTTTCGTTTTCCTCCTATTT
CCACCGCTTTCGTTTTCCCTCTGCCTAACCACTCTTGTATTACGTTTTCG
CTTTGTACCGTCTTTTATCTTTTTTTCCTACCCCCCCGTTTTTTTCTCTT
TTTCCTTATCCACCTCTTTCTTTTTTGTTCTCCCTATCTTCCCTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTCTTGCTTTCTTAAGCTGCCTAAG
AGCCAGTTTTTCAACCGTTCCCCATCTACAGCCACAAAACAAAACAGGAG
CAAAGAGACAGAGGGAGCTAGCTAAAAGATTGTCAGAGTGTTGATAAACT
CAGTGTGTGTGTGTACATGTGTATATGTGTGTGTGCCTGTGTAGAGTATA
GGTGTGTGTGTGTGTATGTTAAACTTCTACAGAGATACAAAAATCTAACT
CTCTCTCTTTCCCTTTCTCTTTTTTTGTCTCTCTCTCTCTCTCCCAATAC
TTTATTGCTTAACTAAGTTTCCCCNGAACAGTTCCCGTGATTTTATTTCT
TGACTGCTTATTCTAGATTCGCGCCCACAAAAAATAATAATTTTCTGTTG
GGGTTGCTCCTCTTGCTGATTATACTATTTATTTCCACCCTTGACTCTTT
CATCTATTCCTTTACCTCTTAATCGTCCATTGTATGGTCCATTTCTTGTT
TACTCACTTTCTCGCGTTTTTTACCTTTTTGAATCAGCATCTTGTTGCTC
ATATTTATTTTCTTTTTTCCTTGACTCTCTCCTTCTATTTTCCTCTTACT
CCCTTCTACCTGTCATTTTCATTTTTCCCCTATTCTCCATTCCTCTTTTT
ATTTTAAGGTATTAACTTTATTCCATTTTAATGTCTTTCTCCCTTTTTAT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_n07.g1 MSMg01no217_n07.g1 CHROMAT_FILE:
MSMg01no217_n07.g1 PHD_FILE: MSMg01no217_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:37 2005
         (207 letters)



>mm_chr13_46639320_46639926
          Length = 607

 Score =  339 bits (175), Expect = 1e-97
 Identities = 198/207 (95%), Gaps = 4/207 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcttgctttcttaagctgcctaagagccagtttttcaaccgttccccatctacagcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 325 ttgtcttgctttcttaagctgcctaagagccagtttttcaactgttccctatctacagcc 266

                                                                       
Query: 61  acaaaacaaaacaggagcaaagagacagagggagctagctaaaagattgtcagagtgttg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaaacaaaacaggagcaaagagatagagggagctagctaaaagattgtcagagtgttg 206

                                                                       
Query: 121 ataaactcagtgtgtgtgtgtacatgtgtatatgtgtgtgtgcctgtgtagagtataggt 180
           ||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||
Sbjct: 205 ataaattcagtgtgtgtgt--acgtgtgtatatgtgtgtgtgcctgtgtagagtataggt 148

                                      
Query: 181 gtgtgtgtgtgtatgttaaacttctac 207
           ||||||||||  |||||||||||||||
Sbjct: 147 gtgtgtgtgt--atgttaaacttctac 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)