Query= MSMg01no218_c17.b1 MSMg01no218_c17.b1 CHROMAT_FILE:
MSMg01no218_c17.b1 PHD_FILE: MSMg01no218_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:06 2005
(280 letters)
>mm_chr13_47437606_47438285
Length = 680
Score = 513 bits (265), Expect = e-150
Identities = 274/277 (98%)
Strand = Plus / Minus
Query: 4 ggaattcagcatcacatttgaaatatcagggaagaggcataaacaaaaaggggcaccagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 480 ggaattcagcatcacatttgaaatatcagggaagaggcataaacaaaaaggggtaccagg 421
Query: 64 ttctgaggtggaatgccaaggccccaaatgctgagagaaaatttgtgcacagcaggaagc 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttctgaggtggcatgccaaggccccaaatgctgagagaaaatttgtgcacagcaggaagc 361
Query: 124 aagcactccagatgggcaggagggagcttgtgccactccatcttccaccacctgctcccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aagcactccagatgggcaggagggagcttgtgccactccatcttccaccacctgctcccc 301
Query: 184 acttcaacaaggaaaacaaaacaaactctttggggaaattatgtctcaccatgtgataag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acttcaacaaggaaaacaaaacaaactctttggggaaattatgtctcaccatgtgataag 241
Query: 244 gttcaagattctcttgtcccctgcactctctgtcagg 280
|||||||||||||||||||||||||||||||| ||||
Sbjct: 240 gttcaagattctcttgtcccctgcactctctggcagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no218_c17.g1 MSMg01no218_c17.g1 CHROMAT_FILE:
MSMg01no218_c17.g1 PHD_FILE: MSMg01no218_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:06 2005
(176 letters)
>mm_chr13_47316664_47317243
Length = 580
Score = 296 bits (153), Expect = 5e-85
Identities = 170/177 (96%), Gaps = 4/177 (2%)
Strand = Plus / Plus
Query: 1 gcagcataagacttgagagtcaaaagctcgggtggatataaatatacatataggcagata 60
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gcagcataagacttgagagtcagaagctcgggtggatataaatatacatacaggcagata 260
Query: 61 tctgt--gtgtgtgtgtgtctacatctttctgaatacatgtgcttgcttttttttttttt 118
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgcgtgtgtgtgtgtctacatctttctgaatacatgtgcttgcttttttttttttt 320
Query: 119 --aacataccctttgctttgtaaaagaagcagggaggaagtgctctagctactcctg 173
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 taaacataccctttgctttgtaagagaagcagggaggaagtgctctagctactcctg 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 580
Length adjustment: 8
Effective length of query: 168
Effective length of database: 572
Effective search space: 96096
Effective search space used: 96096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
