BAC Information

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BAC

Clone NameMSMg01-218F07
Chromosome13 (Build37)
Map Location 75,843,002 - 75,843,193
singlet/doubletsinglet
Overlap genenone
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneEll2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F07.T7 (MSMg01no218_f07.b1)MSMg01-218F07.TJ (MSMg01no218_f07.g1)
ACCAG397540AG397541
length802743
length of high quality
(start - end)
195 (43 - 237)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no218_f07.b1 PHD_FILE: MSMg01no218_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:19 2005CHROMAT_FILE: MSMg01no218_f07.g1 PHD_FILE: MSMg01no218_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTGTAGTGTGGTTATTAAATAAAAGTCTGAGTATCAAGTCTAGTT
TCATCAGATCACTTTGTAGCTTGTCCTGATTTCAGCCCACTGGTATGAGT
TCTGTTAACCCATGGTTTCCACCTATTACTTTGGTGTTCGTATAGTGCCA
GTTCACTTAAATTCATTGAATAAGGAAATTAAGGCAATAACAAGGGGGTG
TATTAAGAAATGTACTTTTACAGGCGCTAACACATAGCTTCATGTCTCAT
AAAACATGAAATATACCTGATTTTTTTCTCTAATTGAAACATAGTCTGGA
GAACACTTTTTTGATAATTTCCCTTGACTTATCCCTTTTTTTATGGAAGA
TTTTACCATTTCGTCTCCCCCCCCCCAAAAAAAAAACAAAACTACTGTTC
GGGTGGCGTGTTTTTACCTCTCTTTTTCCCTTTCTTCTATTTTTGCCTTA
CATACCTCCTTTCCCTTTTTTAATAAACCAATTCCTTCTCTTTCTCCTTT
TCTTCACCTTTTCTTCCCTCTCTTCCCTCTTTTCTCCTATTTTATCCCCC
CCTACCTTCCATTTTCTCGCACTTTTACTCCTCCCTCTCCCCATTATTAT
CTACTTNTTCATTTATTTTCATCCATTTCTTTTCTCCTTCCCCATCTTTT
CCTTCTTTATTCCTACCATATCTTTTTCTCCCCCTTTATCCTCCCTCTCT
TTTTCCTCATTCCTCTTACCCCTCTATCCTCTCCACCTTTCCCTTTTATT
GN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAATTTTGTACATAGTACTACCGGAGGATCCAGC
AATACCTCTTTGGGTCATATCTAGAGACGATGCCCCTATTGGTAAGAAGG
ACACATGCTCCACTATGCCCCCACCAAAAATAAATAATAATAGCCAGAAG
CTGGAAAGGACCCAGATGCTCCTCAACAGAGGAATGTATACAGAGAATGT
GGTATATCTACACAATGTAGTACGACTCAGCTATTAAAAAGACGGAATTT
ATGAAATTCCTAGCCAAATGAATGGACCTGGAGGCTTTCATCCTGTATGA
AGCAACAAACGTTACAAATGGATTTCCCCCATTATGCCCTCCCCTGAAAA
AGGGGATATTTAGCCCCAATATTTACAGATTCCCGAAACATAACCACTTC
TACTTTCTTTAATTTCTGGTAACTTCCCCTAACACTTCGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f07.b1 MSMg01no218_f07.b1 CHROMAT_FILE:
MSMg01no218_f07.b1 PHD_FILE: MSMg01no218_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:19 2005
         (195 letters)



>mm_chr13_75842799_75843393
          Length = 595

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttctgtagtgtggttattaaataaaagtctgagtatcaagtctagtttcatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaattctttctgtagtgtggttattaaataaaagtctgagtatcaagtctagtttcatc 336

                                                                       
Query: 64  agatcactttgtagcttgtcctgatttcagcccactggtatgagttctgttaacccatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agatcactttgtagcttgtcctgatttcagcccactggtatgagttctgttaacccatgg 276

                                                                       
Query: 124 tttccacctattactttggtgttcgtatagtgccagttcacttaaattcattgaataagg 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttccacctattactttagtgttcgtatagtgccagttcacttaaattcattgaataagg 216

                       
Query: 184 aaattaaggcaa 195
           ||||||||||||
Sbjct: 215 aaattaaggcaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)