BAC Information

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BAC

Clone NameMSMg01-218L13
Chromosome13 (Build37)
Map Location 24,720,864 - 24,819,318
singlet/doubletdoublet
Overlap gene6330500D04Rik
Upstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L13.T7 (MSMg01no218_l13.b1)MSMg01-218L13.TJ (MSMg01no218_l13.g1)
ACCAG397790AG397791
length708732
length of high quality
(start - end)
319 (47 - 365)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no218_l13.b1 PHD_FILE: MSMg01no218_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:49 2005CHROMAT_FILE: MSMg01no218_l13.g1 PHD_FILE: MSMg01no218_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,720,864 - 24,721,173)(24,819,034 - 24,819,318)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTGTAAATTCGGCCTCCAAGGCTGAGAGGTTGACTATTTAGA
ACCTGCCAAGGGCTGATCCTTAATTCTGGTTTAGCATCATCTGTGTGTGC
AGGGAGCAAACTGGAGCAGGTGTTCACATTTATCTTTCTCAAGTAGCCTC
TTGAGGCTCTTTGGAACAGAGTCTACAAAAGGAGAGGCTGAAATGGAGCC
TTCCAGCCATCCCAGCTTTGGCCCTGCCAGGAGACAGCTGTTTCTCAGCC
TCTCCCTACTGCCTAATGAAAATATCTGGTTTCAGTAGGAGATGCTTGCT
ACATTGCTGGTTTATTTTTTTTTCCTTGGCGATNCGCTTAAACCAATGTC
CTTGGCTTTATTACTGTTGCCCCCAAACAATCAAATTTAACAGCTCAAGC
ATGAATGACCTATTTTGAACGTGACAGGCATTGCTCTTCAGCTGTGTGAA
TAATTTATGAGCTGAGAGCGCTGTCATCACTCTGATAGTACAGCTCTCTC
CTTTGCCTGTTTAATTATGGAGGGCAATGATGTTCCTTCCTGTTGTCACA
GTTCCTATGCGAAGTCATCTTGCACTTGCGTGCGTATCATGCCTGAAAGG
CAATACGTTAACTGTTTCCTTGCTCTTTCCGTTCCCTCTTTTAACCAAAT
AACTCTCC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTTCTGTGGGAAAAGTGCAGC
AGTAGCCATGCATCAGGGGTCAAGGAAGAGTCATAACACTATTTGGGGTG
GGGTGGGGGCTTCCAACTCTACTCCATATTAGAAGGTTTTAAAGTCCCCA
TGCAGAGGTGCCCTGGAGACCTCAGGGAGCAGCCTTATGAGGTGGAGCAG
AGGCACAGTGACATTAGGCTTCCCTGGAGACTTGGGGATGCAGCAAGTGG
AGAAGCCTGAAGAGGGCAGGGAGTTCTGGGTGGTATGAGCATCGTGGAAA
GGGTGGTGGAATAGATGNGTTCCAAATTCATGGCCCTGAATTTTGTAGTG
TAGTTAAATGAGTTTGCAGTACCCCCCAAAAAATAACCCCTCCTCAGTTT
ACCGTGGGAAGAGAGATGCTGGCTTTATAACTATCTAGCTATTGTTTATT
GTTTTTAAATCTTCACTGTTATTTCAGAACCCCGGGGGATAAAAGACTTT
ACGCCACTAATAACCCTGTGTACCTTTTAGAGAATTAAATTACCTTCTTT
TATCTAAAACAGCCTCTAGAAGATAAACTATATTTATCCTCTTAAAACAA
AACATTGGGCTGGTTAAATCATTCCTTCTACAATGCAAGGGGGGCATTTC
AACTGTAGGCGCCCATTTCTTTACTACTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l13.b1 MSMg01no218_l13.b1 CHROMAT_FILE:
MSMg01no218_l13.b1 PHD_FILE: MSMg01no218_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:49 2005
         (319 letters)



>mm_chr13_24720660_24721378
          Length = 719

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctgtaaattcggcctccaaggctgagaggttgactatttagaacctgccaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctgtaaattcggcctccaaggctgagaggttgactatttagaacctgccaag 264

                                                                       
Query: 65  ggctgatccttaattctggtttagcatcatctgtgtgtgcagggagcaaactggagcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctgatccttaattctggtttagcatcatctgtgtgtgcagggagcaaactggagcagg 324

                                                                       
Query: 125 tgttcacatttatctttctcaagtagcctcttgaggctctttggaacagagtctacaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttcacatttatctttctcaagtagcctcttgaggctctttggaacagagtctacaaaa 384

                                                                       
Query: 185 ggagaggctgaaatggagccttccagccatcccagctttggccctgccaggagacagctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagaggctgaaatggagccttccagccatcccagctttggccctgccaggagacagctg 444

                                                                       
Query: 245 tttctcagcctctccctactgcctaatgaaaatatctggtttcagtaggagatgcttgct 304
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 445 tttctcagcctctccctactgcctaatgaaaatagctgggttcagtaggagatgcttgct 504

                     
Query: 305 acattgctgg 314
           ||||||||||
Sbjct: 505 acattgctgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no218_l13.g1 MSMg01no218_l13.g1 CHROMAT_FILE:
MSMg01no218_l13.g1 PHD_FILE: MSMg01no218_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:49 2005
         (286 letters)



>mm_chr13_24818834_24819519
          Length = 686

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttctgtgggaaaagtgcagcagtagccatgcatcaggggtcaaggaagagtcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aggcttctgtgggaaaagtgcagcagtagccatgcatcaggggtcaaggaagagtcataa 426

                                                                       
Query: 61  cactatttggggtggggtgggggcttccaactctactccatattagaaggttttaaagtc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 425 cactatttggggtggggtggggtcttccaactctactccatattagaaggttttaaagtc 366

                                                                       
Query: 121 cccatgcagaggtgccctggagacctcagggagcagccttatgaggtggagcagaggcac 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cccatgcagaggcgccctggagacctcagggagcagccttatgaggtggagcagaggcac 306

                                                                       
Query: 181 agtgacattaggcttccctggagacttggggatgcagcaagtggagaagcctgaagaggg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggtgacattaggcttccctggagacttggggatgcagcaagtggagaagcctgaagaggg 246

                                                        
Query: 241 cagggagttctgggtggtatgagcatcgtggaaagggtggtggaa 285
           |||||||  ||||||||||||||| ||||||||||||||||||||
Sbjct: 245 cagggaggcctgggtggtatgagcgtcgtggaaagggtggtggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)