Query= MSMg01no231_c11.b1 MSMg01no231_c11.b1 CHROMAT_FILE:
MSMg01no231_c11.b1 PHD_FILE: MSMg01no231_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:22 2005
(314 letters)
>mm_chr13_60819264_60819972
Length = 709
Score = 569 bits (294), Expect = e-166
Identities = 304/310 (98%), Gaps = 5/310 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaaaacatatttgggacaccagagtttgtgggtaaatctcctctgcccttgggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaacatatttgggacaccagagtttgtgggtaaatctcctctgcccttgggc 264
Query: 65 tcccttgtgtctcatccacagtccactggctggatctccctggctctaagatcactccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccttgtgtctcatccacagtccactggctggatctccctggctctaagatcactccct 324
Query: 125 gtccctgtttctgtttgttacatcatgataaactgttggcctctacctttccaagctaac 184
||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccctgtttctgttcgt-----catgataaactgttggcctctacctttccaagctaac 379
Query: 185 gagtgtttgttttctctcagctccggagatagtcaactatgagcccctgggtcttgaggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtgtttgttttctctcagctccggagatagtcaactatgagcccctgggtcttgaggc 439
Query: 245 agatatgtggtaaggagcacgcccttggtgttgttttctttctgacctatctgactaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agatatgtggtaaggagcacgcccttggtgttgttttctttctgacctatctgactaatt 499
Query: 305 ttctaacatg 314
||||||||||
Sbjct: 500 ttctaacatg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 709
Length adjustment: 9
Effective length of query: 305
Effective length of database: 700
Effective search space: 213500
Effective search space used: 213500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_c11.g1 MSMg01no231_c11.g1 CHROMAT_FILE:
MSMg01no231_c11.g1 PHD_FILE: MSMg01no231_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:22 2005
(284 letters)
>mm_chr13_60936488_60937171
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%)
Strand = Plus / Minus
Query: 1 tttctatgttgaaatggtataaattcgctgaaggggaaaaaagacatccccaggacaata 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 tttctatgttgaaatggtataaattcgctgaaggggaaaaaagacatccataggacaata 425
Query: 61 tggaagctgaagtagaagcatttacatgatctgatatcacctgaggccgtgatcctattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tggaagctgaagtagaagcatttacatgatctgatatcacctgaggccgtgatcctattc 365
Query: 121 tccatgaagcacctatcgttagtctcaacatcactccaaaaggacactgtataggatctt 180
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 364 tccatgaagcacctatcgttagtctcaacatcacttcgaaaggacactgtataggatctt 305
Query: 181 ttttaactttttgatagagaacttttattctataatggctttactaatgccttgagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttttaactttttgatagagaacttttattctataatggctttactaatgccttgagaatt 245
Query: 241 ttatacatcttatttttcatttcatttccacatctgctctatcc 284
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 244 ttatacatcatatttttcatttcatttccacatctgctctatcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
