BAC Information

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BAC

Clone NameMSMg01-231J13
Chromosome13 (Build37)
Map Location 20,899,850 - 20,900,131
singlet/doubletsinglet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J13.T7 (MSMg01no231_j13.b1)MSMg01-231J13.TJ (MSMg01no231_j13.g1)
ACCAG398364AG398365
length702706
length of high quality
(start - end)
307 (38 - 344)281 (57 - 337)
definitionCHROMAT_FILE: MSMg01no231_j13.b1 PHD_FILE: MSMg01no231_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:56 2005CHROMAT_FILE: MSMg01no231_j13.g1 PHD_FILE: MSMg01no231_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTGCCTACAAAG
AACTTTTCCTCCTACATTTTAGAGTCTCTGGTAGAAGGAGGTACTTTGCA
CACTGTGAAGAACCAACCTGCCTCCATTTTAGGCTTAAAGGTAATCTTAT
AGTAAAGATAAAAACTAGCTTCATTCCTGCTTATGATTAAACCCCTGTTC
CTCAAGGATTGGGCCATCCCCCTACCCACACCCCCCCCCATATAACCTTA
ACCACAAATGATTCTGTCTGCACATTCTAGGAATGACAATCATAGTTTCA
AAAAGTTGTTCATAACCATTTTGCAACCCTACTTCTGTTTCTTAAAGTTG
TATGAGCACCCATGACGACCTTGCTATGGCTACCTGTTGAGATCACCCCG
TTTTGACCACCTGTTGTAGTCTGCTCTTGTAATCCCGCCTATTTTCCCCA
TTTGGAAACCTCCTACCTCTGAGTTATAAAAGCCTTGGATTCCTTGTTAG
AGGCTGCCTCCCCTATTTCTGCCTTCACTGTTGATTTTAATATGGTTTAA
ATAGTAACAAGCCACAATTCTCTCTATTGTTCAGCTCGCAGTCTTGTTTC
CAAAGTCTTGGCATTTGTGCTTGTATTTCTCACTAAAGATGAGATTTGTG
TTCTATGGTGCAGACTGTTTTTCACACCAACAGACCACCAAGACCTTCTG
AG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGGAACAGAGAGAAAGCTGAGATGGTGGTTGGTCCTTTTTATA
CCCACTCCCACCACACACACCTAGGGTTCCAGGTGGTTGGTTGCAGAGGC
AGGTCATGACATGAGCAACTGCTAGGTCTCTGAAGGCAGTCCAGTGGAAT
TGCCTGTACACTAACATTATGGACAATTTTGTGTCATGCAAGTCAAGAAT
TAAGATACAATGGGGGAAAAACTGTAAAGACCAGAATACTGAAAAAAATG
TCTTAAGAAATAAAAGGCCTGAATGGACCTGTATCAAGTTAAGATATTAT
TTTACTACTCACCAACTTGGATTAGTGTTCTTGGGCTGCACACTATACAA
CACCACTACCACAGTTAGGCTGGTTACAGCCACAAGAACGAATTCTCTCA
CAGTTGTGGAGGTTGAGGGTCTGAAGTAAACGGTTTGTCTCCTGCCTTCT
GGGGTTGCACGTCTTCTTGTTCTTAGTCTTATAGCTGCATAACCCCTGCA
TTCATAGTCATGTGACCTTTCTCCTTTGCATGTGTCATTGTATCTTCTTG
TGAGAATACTTTATTGACTATGGGCCTGGTCTAGTCTTGCATAACCTTAT
CCTACTACTTGTATCAGTTCCAATTAAGGTATATGATCCCATCCCCAGAA
AAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j13.g1 MSMg01no231_j13.g1 CHROMAT_FILE:
MSMg01no231_j13.g1 PHD_FILE: MSMg01no231_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:56 2005
         (281 letters)



>mm_chr13_20899648_20900331
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 279/282 (98%), Gaps = 3/282 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaacagagagaaagctgagatggtggttggtcctttttatacccactccc-accacaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 ggaacagagagaaagctgagatggtggttggtcctttttatacccactccccaccacaca 262

                                                                       
Query: 62  cac--ctagggttccaggtggttggttgcagaggcaggtcatgacatgagcaactgctag 119
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacacctagggttccaggtggttggttgcagaggcaggtcatgacatgagcaactgctag 322

                                                                       
Query: 120 gtctctgaaggcagtccagtggaattgcctgtacactaacattatggacaattttgtgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtctctgaaggcagtccagtggaattgcctgtacactaacattatggacaattttgtgtc 382

                                                                       
Query: 180 atgcaagtcaagaattaagatacaatgggggaaaaactgtaaagaccagaatactgaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgcaagtcaagaattaagatacaatgggggaaaaactgtaaagaccagaatactgaaaa 442

                                                     
Query: 240 aaatgtcttaagaaataaaaggcctgaatggacctgtatcaa 281
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaatgtcttaagaaataaaaggcctgaatggacctgtatcaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space:   183600
Effective search space used:   183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)