BAC Information

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BAC

Clone NameMSMg01-231J17
Chromosome13 (Build37)
Map Location 89,255,646 - 89,255,970
singlet/doubletsinglet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J17.T7 (MSMg01no231_j17.b1)MSMg01-231J17.TJ (MSMg01no231_j17.g1)
ACCAG398369AG398370
length729733
length of high quality
(start - end)
329 (46 - 374)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no231_j17.b1 PHD_FILE: MSMg01no231_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:56 2005CHROMAT_FILE: MSMg01no231_j17.g1 PHD_FILE: MSMg01no231_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGGTGGTACAGTCTCTGGGTGGCCTTTCCTTTAGTCTCTGCTC
TACACTTAATCTCCATATTTACTCCTGTGAGTATTTTTGTTCTCCTTCTA
AGAAGGACTGAAGTATCCAACTTTTGTCTTGCATACTTTTGCACAAGCTA
CTCAGTCTGTACAATATCAATTGTATGTATTTATATATGTATAAATATGC
GATCCACTCATTTCTATGTCACTTGTGTTTATACATATGCATATATACAT
ATCCTGCTCAGTCTACATAATGTCTATTTTATGTATATAAATATATGTGT
ATATTTTTAAAAAGATTTGTATTTATTTATTGTATGTAAGTACACTGTAA
CTGTGTCCAGACACTCCACAACACGGCATCAGATCTTGTTACTGATGGTT
GTGAGCCATCATGTGTTAGCTGGGATTTGAACTCAGGACCTTCAGAAGAG
CAGCCAGTGCTCTTAACTGCTGGGCCATCTCTCCAACCCTATGTGTGTAT
TATAAATATTATCTGTATGAATATATATGTGTGTATATATATATTTTTTC
TGCTCAGTCTGTGTAATGTCTCTTGTATGTATGTATATGTCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCCAA
GTCTGTATTTCTATATACATACACAAGCN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCGGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCTTGTTTTTATACCCCCACCATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGACAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCACGAAGAATGAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j17.b1 MSMg01no231_j17.b1 CHROMAT_FILE:
MSMg01no231_j17.b1 PHD_FILE: MSMg01no231_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:56 2005
         (329 letters)



>mm_chr13_89255261_89255989
          Length = 729

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaggtggtacagtctctgggtggcctttcctttagtctctgctctacacttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattcccaggtggtacagtctctgggtggcctttcctttagtctctgctctacacttaa 651

                                                                       
Query: 65  tctccatatttactcctgtgagtatttttgttctccttctaagaaggactgaagtatcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tctccatatttactcctgtgagtatttttgttctccttctaagaaggactgaagtatcca 591

                                                                       
Query: 125 acttttgtcttgcatacttttgcacaagctactcagtctgtacaatatcaattgtatgta 184
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 590 acttttgtcttgcatacttttgtacaagctactcagtttgtacaatatcaattgtatgta 531

                                                                       
Query: 185 tttatatatgtataaatatgcgatccactcatttctatgtcacttgtgtttatacatatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tttatatatgtataaatatgcgatccactcatttctatgtcacttgtgtttatacatatg 471

                                                                       
Query: 245 catatatacatatcctgctcagtctacataatgtctattttatgtatataaatatatgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catatatacatatcctgctcagtctacataatgtctattttatgtatataaatatatgtg 411

                                    
Query: 305 tatatttttaaaaagatttgtattt 329
           | ||||||| |||||||||||||||
Sbjct: 410 tgtattttttaaaagatttgtattt 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)