BAC Information

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BAC

Clone NameMSMg01-231M03
Chromosome13 (Build37)
Map Location 23,709,620 - 23,869,714
singlet/doubletdoublet
Overlap geneHist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a
Upstream geneV1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d
Downstream geneTrim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M03.T7 (MSMg01no231_m03.b1)MSMg01-231M03.TJ (MSMg01no231_m03.g1)
ACCAG398476AG398477
length737769
length of high quality
(start - end)		316 (45 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no231_m03.b1 PHD_FILE: MSMg01no231_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:07 2005CHROMAT_FILE: MSMg01no231_m03.g1 PHD_FILE: MSMg01no231_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,869,408 - 23,869,714)(23,709,620 - 23,709,906)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCCAACCACTGCCTCAACTCAGGTTACAGGCAAATGTTAGACAG
GGTTCTACCTTCCCACCTCAAATAGTAGACTCTTCACCACTGTGAAATCC
TGAGACCATAACAGTGCCGAGGCACCGTGAGAAAGAAGGAGCCCCTGTGT
CCTGGATTCCAAGATGACCCCTTCAGATACCCATAGCTTTTGTTGTGTAT
TTGTGAGACTATATTCAAGTGTAGTTCATCTCAATGGAAGAGACGGAAGT
TTGTGAGTGCCCAAACCATCTACCATTACCCCACCAAACACTAGTGACAC
AAAAGCAATTTGTATTCCGCCCNGCGACCCATGACCCTCATATCTGTGTC
TTGACTCATGAGCGCCCCCCACCAACAGAGTGTATAAGGAGGGAGACGTT
TTTCAGATGAGACTTCAGCGATATGCTCCCAAAGATAAACCCTCAGAAAC
ACTCCTGTGCCAGTTTGACTCAAGCCATTCATTTGAAAGAAGAGAACCTT
GAGAAAATGCCTCCATAAGACCTAGCTGTAGGCCACCTTCTTAGCGACTG
ATGCTGGAGCGCTCCCGCCCATTGTTGGTTCCCGCTTCCCCGCCTCTTAT
CTCGCTTGATTACTTCCCACCCTTTATTAACTTGCCTGTATCCATTGCCT
TCTTGGCATCTGGCATTCTCCCTTCCTGTCCTTCATT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGAAGATGGTCAATGAG
GTTTCTAAAGAGCCCGGCGTGGCAAATGTGGAAGCTCTTTGGAACATTCA
CGTATTTCAAAGCTCGTGGATGACCACAGTCATGGTTCAACCTGATTCAC
CCTCAGGAGAGGTCCCTCAGGTTTAAGCTCCCACTTAACGTTTGACTCAC
AGGAGACAATAAATGATAGCTACTCACTGACTTAAGTATTCTTGTTTGGA
CTTTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCTTTTCTTCCCCCCCCCCCCCCTCCTTCCCTTCTTCCC
TTTCTTCCTTTCTATCCCCCCCCCCCAAAAAAAAATTACCCTTTCTCTTT
TGCCGCTTTTCCCCTTTCTTCTTCCCTTTTACCCCTTCTTCCCCTCCTTT
CCTTTCTACCCCTTTCTTCCCTCTTTTTCCCCTATTCCCCCTTTTCTTCC
CTTTCTTCCCCCTTTTCCCCTCCTCCCTCCTCTTCCTTATTCCCCTTTTT
TTTTTTCCCTTTTCTCCTCCCCCTCCCCTTTACCTTACAACCTTACTTCT
TCTTTCCTTTCCCTCCCCCTATCTTTTTTTCCCTTCCTTCTCCCTTTTCC
CCCTTTATCCCCCTTTTTTTCCTACTTCTTCCCCGTGTTCCTCCTTTTCC
CCTTCCTTTTTTCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m03.b1 MSMg01no231_m03.b1 CHROMAT_FILE:
MSMg01no231_m03.b1 PHD_FILE: MSMg01no231_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:07 2005
         (316 letters)



>mm_chr13_23869201_23869916
          Length = 716

 Score =  524 bits (271), Expect = e-153
 Identities = 298/307 (97%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcatcccaaccactgcctcaactcaggttacaggcaaatgttagacagggttctacctt 67
           |||||||||||||||| ||||||||||| |||| |||||||||||||| | |||||||||
Sbjct: 514 ttcatcccaaccactgtctcaactcaggctacaagcaaatgttagacatgtttctacctt 455

                                                                       
Query: 68  cccacctcaaatagtagactcttcaccactgtgaaatcctgagaccataacagtgccgag 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 454 cccacctcaaatagtagactcttcaccactgtgaaatcctgagaccataacagtgctgag 395

                                                                       
Query: 128 gcaccgtgagaaagaaggagcccctgtgtcctggattccaagatgaccccttcagatacc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcaccgtgagaaagaaggagcccctgtgtcctggattccaagatgaccccttcagatacc 335

                                                                       
Query: 188 catagcttttgttgtgtatttgtgagactatattcaagtgtagttcatctcaatggaaga 247
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 334 catagcttttgttgtgtatttgtgagactatattcaagtatagttcatctcaatgggaga 275

                                                                       
Query: 248 gacggaagtttgtgagtgcccaaaccatctaccattaccccaccaaacactagtgacaca 307
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 gacggaagtttgtgagtgcccaaaccaactaccattaccccaccaaacactagtgacaca 215

                  
Query: 308 aaagcaa 314
           |||||||
Sbjct: 214 aaagcaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_m03.g1 MSMg01no231_m03.g1 CHROMAT_FILE:
MSMg01no231_m03.g1 PHD_FILE: MSMg01no231_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:07 2005
         (287 letters)



>mm_chr13_23709420_23710106
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttttgaagatggtcaatgaggtttctaaagagcccggcgtggcaaatgtggaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttttgaagatggtcaatgaggtttctaaagagcccggcgtggcaaatgtggaagct 260

                                                                       
Query: 61  ctttggaacattcacgtatttcaaagctcgtggatgaccacagtcatggttcaacctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttggaacattcacgtatttcaaagctcgtggatgaccacagtcatggttcaacctgat 320

                                                                       
Query: 121 tcaccctcaggagaggtccctcaggtttaagctcccacttaacgtttgactcacaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaccctcaggagaggtccctcaggtttaagctcccacttaacgtttgactcacaggaga 380

                                                                       
Query: 181 caataaatgatagctactcactgacttaagtattcttgtttggacttttttcttccttcc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 caataaatgatagctactcactgacttaagtattcctgtttggacttttttcttccttcc 440

                                                          
Query: 241 ttccttccttccttccttccttccttccttccttccttccttccttc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccttccttccttccttccttccttccttccttccttccttccttc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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