BAC Information

Click to search

BAC

Clone NameMSMg01-231M04
Chromosome13 (Build37)
Map Location 23,822,248 - 23,822,538
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe
Downstream geneHist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M04.T7 (MSMg01no231_m04.b1)MSMg01-231M04.TJ (MSMg01no231_m04.g1)
ACCAG398478AG398479
length646759
length of high quality
(start - end)		374 (45 - 418)334 (77 - 410)
definitionCHROMAT_FILE: MSMg01no231_m04.b1 PHD_FILE: MSMg01no231_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:07 2005CHROMAT_FILE: MSMg01no231_m04.g1 PHD_FILE: MSMg01no231_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTAGAGCAGAATTTCCAGCATCCATTGCTATGCTCCATTTATG
TAATGCTAGGAGTCAAACTCAAGGCTTCATGAATGCTGGGCAAGTATGCT
AGAAGCTGAGCTACAACCTCAGTGACCAAAATGTTGCTCATTCCACTCTT
CTGCTTTCTGTGATCTCATTCATTAGGTTGAGCTGCCTTTTCCCTCCATT
ATTTATTTCCTTCCTTCCTCCCTTCCTTCCTTTTTCCTTTTAAAGATAAT
GTTTACTATATGAACCTGACTGACCTAGAACTCACAGAGATCCACCTGGC
TCCTCCCCACTCCCCCTCTGCCACCCCCACGCCCCAATTTCTTTTCCTGA
GACAGACATACTATGTAGACAGACTGGCTGGGATAATCAGAAACCTTCCT
TGGTTAAAACCTTTCCCAATTTGAAAAATCTTTTTTTTTTTAAAAAAAGC
GCCCAAAAGGGGTTTTTTAAAAAAAAAACCGCCCCGCGGGGACGAAAAAA
AATTGGAGAAAAAACCTCTTCTTGGAAAAAAAAACGCCCNCCCTTATTTT
TTAAAAAAACCCCCCGGGGGGGGAGAAAAAAACCATACCGTTTTTG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAAAGCGTCAGCTGGCTAA
TCATTCACTAACTATTACTCAGCAGACCCTAAAGCCCTTCCACATACAGA
GAGTTTTGATGACAAGACTGATGACCTAGAACTGTGACAGGGTAAGAAGC
TGAGGCCGAATCAAAAGTTCCATTGTGAATATTTGTTTTACTTTTTATTG
TTTGTTTGTCTTTGAAACTGAGCGTCCTGTCAGAAAGAAAACTACAACAG
CCATTTATTTCTCTTTCTTTCTCTCTTTTCTCTTTCTTTTTTCTTTTTTC
CTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG
AGAGAGAGANANNNNNCNTCCCCCCCCCCAAAAAAAAAAAAAAACNGCGC
GGGGGGGCGGGAGCCCCCCCCCGTCAGGAGACAAAACGCTCCCTTTGATA
ATGCATTTATTTCTCTCTCTTCCTCCCTCTTAACACTCTACCCTCGTGAC
ATATCTTCCCCTGCGTACTCATAACTGTAATAAATCTCTATGTCCTTGCT
TCTTCAATTGGTTGACTCTGACCTCCCACCTTTCTTGAGTGCTTCGCTCC
ATCTTTCTAATTTACCTTTTTTTTACTTTCCCCCCTCTTGTATGTCTTCG
TTATTATTTTTCTTTTATCCTCTCATATTTTTTTTAAACAATTTTCTCAT
TTTCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m04.g1 MSMg01no231_m04.g1 CHROMAT_FILE:
MSMg01no231_m04.g1 PHD_FILE: MSMg01no231_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:07 2005
         (334 letters)



>mm_chr13_23822104_23822837
          Length = 734

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctaaagcgtcagctggctaatcattcactaactattactcagcagaccctaaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 435 caggctaaagcgtcagctggctaatcattcactaactattactcagcagattttaaagcc 376

                                                                       
Query: 61  cttccacatacagagagttttgatgacaagactgatgacctagaactgtgacagggtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttccacatacagagagttttgatgacaagactgatgacctagaactgtgacagggtaag 316

                                                                       
Query: 121 aagctgaggccgaatcaaaagttccattgtgaatatttgttttactttttattgtttgtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 315 aagctgaggccgaatcaaaagttccattgtgaatatttgttttactttttgttgtttgtt 256

                                                                       
Query: 181 tgtctttgaaactgagcgtcctgtcagaaagaaaactacaacagccatttatttctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtctttgaaactgagcgtcctgtcagaaagaaaactacaacagccatttatttctcttt 196

                                                              
Query: 241 ctttctctcttttctctttcttttttcttttttccttttgtgtgtgtgtgt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctttctctcttttctctttcttttttcttttttccttttgtgtgtgtgtgt 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |