BAC Information

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BAC

Clone NameMSMg01-232A21
Chromosome13 (Build37)
Map Location 35,346,113 - 35,402,825
singlet/doubletdoublet
Overlap genenone
Upstream gene3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232A21.T7 (MSMg01no232_a21.b1)MSMg01-232A21.TJ (MSMg01no232_a21.g1)
ACCAG398687AG398688
length752759
length of high quality
(start - end)
676 (45 - 720)300 (77 - 376)
definitionCHROMAT_FILE: MSMg01no232_a21.b1 PHD_FILE: MSMg01no232_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:27 2005CHROMAT_FILE: MSMg01no232_a21.g1 PHD_FILE: MSMg01no232_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,402,236 - 35,402,825)(35,346,113 - 35,346,412)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTAGGGCAATATTGAGTTGGGGTAACACCAAGTTACTAGGGAGA
GAGCTTTGTAGGGTGCAAGCATTACTGGAGTCATGAAGATGTTATCAGGA
GATAGCAACATGGGCAAAAGTAAGACTTGGCAGGAGACCTAGTCTCCCAT
TTTCTGCATGGCTCACCTACCCAGACATCCCACTTAGACAGAGCAAAACA
ACTAATGTCCACTGCCTACTTCCTGGTTTTGTTCTTTCCAAAATTGCTCC
TAGGGAAATCTCTAATATCAGCAATTCAAACCTTGGGAGCTTTGAGTTTC
AATAGTACTGTTAAGTGACATTGAAGGAAAATGGCAGGTGTCTAGTCACA
AAGGACAGGCTCCTATTCTAACAAATATCTCCCATTTTAAAAATAAATGT
CTAGCCATCTCAGCAATATTGTTGGTTAAAAAGAATCCTTTCTCCCATTG
AATTACCTTTGTACCTTTGATGATATTTGTTAGAGTCTCTTCCTGGACTC
AATTCTGTTTCACTGATCAGATTATCCATTTTCTGCCAATATCCTATTGC
CTTAATTACAGTAGCCTTGGACTGTTTAAAGTCAAATAACAGCAATTCTA
ACTTTCTCCTTTAGNATTATTTTGATTATTCTATGTTTGTTACTTTTTCA
TATAAGCATTTTTTTAATAAGGAACATGCTAAAATTCTCTCTGGCATTGT
GT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGCTCTGCAAACCTTTAGT
ACACAGTTTGCTAGCCCTTACAGACTTTTGACAGAGATTTCAAGACAGTC
TAGTACTGTCTGTGCTGCCTGCTTCTTAGTGACCACTTTTATGCAGATTT
GCAATGAGAAAGAGCACACTGAGCAAGGACAAGAACAAAATGTACAGCTT
AAGGAGAGACAGGGCACCAGGAAGTGTGCTGCTGCTCATGCCGTTAAAAT
GAGATTCTCCTAGCTTTATGCTTTTATCGGTTAGAGTCAAAAAGGGTATT
TTCTTATAAAAAACAAACTTTAAGTCCATGACGGTTCTTCCCAGGAAGAA
GAATAAATTTCCAGTGGACCCCGCCTTTGCAAGTGATGAGGAAACAAAGA
GCATGTGAGAACAACAGGAAGTGATCTTCCTGGCCTGAGGGCAGATCTCC
AGCAGGATGCACAGCAGCGAGTCCTTGGGAGAAGGGAGAATCCCATGGAC
CCAGCTAATATACTTCTGAGGACAGAAGGCAGTGCTAGAAGAGAGATTAT
AACCTCAGTCCAGCTATAGGGAACACCTTTCAGACTTGTGCCTCGAATTT
ACACTGACACATCAACTCCTCTTTCCTCAATAATGACCAGTTTTATTGTT
TCTCGACATTTCCTTCTGTACCCTTGTTTCCCTTTAACATTCGTTACCCT
TTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_a21.b1 MSMg01no232_a21.b1 CHROMAT_FILE:
MSMg01no232_a21.b1 PHD_FILE: MSMg01no232_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:27 2005
         (676 letters)



>mm_chr13_35402236_35403311
          Length = 1076

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtagggcaatattgagttggggtaacaccaagttactagggagagagctttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaattccagtagggcaatattgagttggggtaacaccaagttactagggagagagctttg 531

                                                                       
Query: 65  tagggtgcaagcattactggagtcatgaagatgttatcaggagatagcaacatgggcaaa 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tagggtgcaagcattagtggagtcatgaagatgttatcaggagatagcaacatgggcaaa 471

                                                                       
Query: 125 agtaagacttggcaggagacctagtctcccattttctgcatggctcacctacccagacat 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agtaagacttggcaggatacctagtctcccattttctgcatggctcacctacccagacat 411

                                                                       
Query: 185 cccacttagacagagcaaaacaactaatgtccactgcctacttcctggttttgttctttc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 410 cccacttagacagagcaaaacaactaatgtccactgcttacttcctggttttgttctttt 351

                                                                       
Query: 245 caaaattgctcctagggaaatctctaatatcagcaattcaaaccttgggagctttgagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 caaaattgctcctagggaaatctctaatatcagcaattcaaaccttgggagctttgagtt 291

                                                                       
Query: 305 tcaatagtactgttaagtgacattgaaggaaaatggcaggtgtctagtcacaaaggacag 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 290 tcaatagtactgttaagtgacattgaaggaaaatggcaggtatctagtcacaaaggacag 231

                                                                       
Query: 365 gctcctattctaacaaatatctcccattttaaaaataaatgtctagccatctcagcaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gctcctattctaacaaatatctcccattttaaaaataaatgtctagccatctcagcaata 171

                                                                       
Query: 425 ttgttggttaaaaagaatcctttctcccattgaattacctttgtacctttgatgatattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgttggttaaaaagaatcctttctcccattgaattacctttgtacctttgatgatattt 111

                                                                       
Query: 485 gttagagtctcttcctggactcaattctgtttcactgatcagattatccattttctgcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gttagagtctcttcctggactcaattctgtttcactgatcagattatccattttctgcca 51

                                                             
Query: 545 atatcctattgccttaattacagtagccttggactgtttaaagtcaaata 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  atatcctattgccttaattacagtagccttggactgtttaaagtcaaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_a21.g1 MSMg01no232_a21.g1 CHROMAT_FILE:
MSMg01no232_a21.g1 PHD_FILE: MSMg01no232_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:28 2005
         (300 letters)



>mm_chr13_35345913_35346612
          Length = 700

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaagctctgcaaacctttagtacacagtttgctagcccttacagacttttgacagag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaagctctgcaaaccttcagtacacagtttgctagcccttacagacttttgacagag 260

                                                                       
Query: 61  atttcaagacagtctagtactgtctgtgctgcctgcttcttagtgaccacttttatgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcaagacagtctagtactgtctgtgctgcctgcttcttagtgaccacttttatgcag 320

                                                                       
Query: 121 atttgcaatgagaaagagcacactgagcaaggacaagaacaaaatgtacagcttaaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgcaatgagaaagagcacactgagcaaggacaagaacaaaatgtacagcttaaggag 380

                                                                       
Query: 181 agacagggcaccaggaagtgtgctgctgctcatgccgttaaaatgagattctcctagctt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagagcaccaggaagtgtgctgctgctcatgccgttaaaatgagattctcctagctt 440

                                                                       
Query: 241 tatgcttttatcggttagagtcaaaaagggtattttcttataaaaaacaaactttaagtc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgcttttaccggttagagtcaaaaagggtattttcttataaaaaacaaactttaagtc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)