BAC Information

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BAC

Clone NameMSMg01-232C10
Chromosome13 (Build37)
Map Location 26,585,531 - 26,586,176
singlet/doubletsinglet
Overlap geneLOC100042180
Upstream geneLOC214973, LOC666221
Downstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232C10.T7 (MSMg01no232_c10.b1)MSMg01-232C10.TJ (MSMg01no232_c10.g1)
ACCAG398750AG398751
length728731
length of high quality
(start - end)
318 (44 - 361)657 (75 - 731)
definitionCHROMAT_FILE: MSMg01no232_c10.b1 PHD_FILE: MSMg01no232_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:34 2005CHROMAT_FILE: MSMg01no232_c10.g1 PHD_FILE: MSMg01no232_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTTTTTTCTTTTCTGTGACTTTCACTTTTGCATTTGGATTATAA
CTACTTTCTTAATCATTAACCTCTAAAAGAGTACCTGACTACCCACCCAC
CCACTTCTACCTCAACCCTCTAGCGTTTGATTTTTCTGGGGCATCAAACC
TCCCCAAGACCAAACACATCCCCTGCCACTGAGGCCAGATAAGACAGTCC
TCTGCTACATGTATAGCAGGGGCCACAGACTAAAACGTGTATGATCTTTG
GTTGGTGGGTTAGTCCCTGGGAGCTCTGAGGGGTCCTGTTATTGAAACTG
CTGTTCTTGGCATGGCCCTGCAATTCTCTTCATCTCCTTCAGTTCTTCTT
TTTCCACACGGGTTCAGTCCAATGGTTGGCTATAAGTATCTGCATTTGTC
TCAGTCAGGTGGTGGTAGAGCCTCTCAGAGGACAGGCATGCCAGGCTCCT
GTCTGCAAGCTCATCTTGCCATCAGCAACAGTGTCTGGGATTTGGTGACT
GTGCATGGAATGGATCCCAAGTAGGGACAGTCTCTTGATCTGCTTTCCTT
CAGTCTCTGTTCCATTTTGTCTCTGCATTTCCTTTAGACAGGAACAATTC
TGGGTCAAAATTTTTGAGATGGGTCTGTGGCCTCATCCATCAACTGGGGA
CCATGTCTATCTCCTGGAGGTGGTCTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAAAATTAAGACAGGGAGATCCCT
GAGTTCAAGGTCATCTGGGATTAAAGGTGTGGAGACACACAGCTTTAATC
TGGGCTATACTTTCTGCTGGAGACCTACATAAGGACATTGGGAGAAGGAA
GACTCACTCTCTCTTCTTTGCCTGCTTGCTTTGTGTGACAGGGAAACTGC
TAGATCCTTGTACTTCCACGCACAGCTGACACCGACCATTGTTGGGAGTT
GGACTGCAGACTGTAAGTCATCAACAATTCCTTTACTATATAGAGACTAT
CTATAAATTTTGTGACTCTGGAGAATTCTGACTAATACAGCAGGGAAATG
GGTGTGATTGAAGGTAATCAAATTAGTGAATTAAGCCAGTCTGAGAATGA
CAGATGTCTGCTATCTCATAGGTGGGTCATGGACATTTTACAGATCTGAA
AAACCATGTATATATGTGACAAAAATACTTTTTACAATTACAAATACATA
AGTAATAGAAAATGCACATTTTATTCCAACTTGTTTTTAAGATTTTATTT
TCTGTTAAATCATATGTATGTATTAAAGTATGGGTATGTTCATGCAAGTT
CAGGTACCTGTGGAGGTCAGAAGAAAGGCATCAGATCTTTTTGGTGCTAG
AGTTACAGGCAGTTGTGATGTGATGCTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_c10.g1 MSMg01no232_c10.g1 CHROMAT_FILE:
MSMg01no232_c10.g1 PHD_FILE: MSMg01no232_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:34 2005
         (657 letters)



>mm_chr13_26585120_26586176
          Length = 1057

 Score = 1172 bits (606), Expect = 0.0
 Identities = 636/646 (98%)
 Strand = Plus / Minus

                                                                        
Query: 12   gacagggagatccctgagttcaaggtcatctgggattaaaggtgtggagacacacagctt 71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gacagggagatccctgagttcaaggtcatctgggattaaaggtgtggagacacacagctt 998

                                                                        
Query: 72   taatctgggctatactttctgctggagacctacataaggacattgggagaaggaagactc 131
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 997  taatctgggctatactttctgctggagacctacacaaggacattgggagaaggaagactc 938

                                                                        
Query: 132  actctctcttctttgcctgcttgctttgtgtgacagggaaactgctagatccttgtactt 191
            |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 937  actctctcttctttgcctgcttgccttgtgggacagggaaactgctagatccttgtactt 878

                                                                        
Query: 192  ccacgcacagctgacaccgaccattgttgggagttggactgcagactgtaagtcatcaac 251
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  ccacgcacagctggcactgaccattgttgggagttggactgcagactgtaagtcatcaac 818

                                                                        
Query: 252  aattcctttactatatagagactatctataaattttgtgactctggagaattctgactaa 311
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 817  aattcctttactatatagagactacccataaattttgtgactctggagaattctgactaa 758

                                                                        
Query: 312  tacagcagggaaatgggtgtgattgaaggtaatcaaattagtgaattaagccagtctgag 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  tacagcagggaaatgggtgtgattgaaggtaatcaaattagtgaattaagccagtctgag 698

                                                                        
Query: 372  aatgacagatgtctgctatctcataggtgggtcatggacattttacagatctgaaaaacc 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  aatgacagatgtctgctatctcataggtgggtcatggacattttacagatctgaaaaacc 638

                                                                        
Query: 432  atgtatatatgtgacaaaaatactttttacaattacaaatacataagtaatagaaaatgc 491
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  atgtacatatgtgacaaaaatactttttacaattacaaatacataagtaatagaaaatgc 578

                                                                        
Query: 492  acattttattccaacttgtttttaagattttattttctgttaaatcatatgtatgtatta 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  acattttattccaacttgtttttaagattttattttctgttaaatcatatgtatgtatta 518

                                                                        
Query: 552  aagtatgggtatgttcatgcaagttcaggtacctgtggaggtcagaagaaaggcatcaga 611
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 517  aagtatgggtatgttcatgcaagttcaggtacctgtggaggccagaagaaaggcatcaga 458

                                                          
Query: 612  tctttttggtgctagagttacaggcagttgtgatgtgatgcttgga 657
            ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 457  tctttttggtgctagagttgcaggcagttgtgatgtgatgcttgga 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)