BAC Information

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BAC

Clone NameMSMg01-232F24
Chromosome13 (Build37)
Map Location 36,748,440 - 36,748,748
singlet/doubletsinglet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232F24.T7 (MSMg01no232_f24.b1)MSMg01-232F24.TJ (MSMg01no232_f24.g1)
ACCAG398905AG398906
length733760
length of high quality
(start - end)		320 (44 - 363)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no232_f24.b1 PHD_FILE: MSMg01no232_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:51 2005CHROMAT_FILE: MSMg01no232_f24.g1 PHD_FILE: MSMg01no232_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGCTTTCATAGGTCAGGGGGCAATTTACAAATATCAAATATTTCC
AAATAACAGGCGAGGGTGGTGAAAGGTGTGAGGCCACCACTACTGCTTGT
GTCCCAAGGTAGTGTAGAAATAGCATGGGGCTCCCTCTGCCCATGGGGAA
ATGCTGGATCCAATTTTATTAGAGTCTTACAAGATAGTTCTTCCCCAAAT
CTGGGTCCCCATTTCCCTCTTGTGAGCATATTATTCAACCTCTACCGTGG
ACTTTCATTCTGACAAAGACAAGAGTGCCAGCCATTCATGGGGAAGCCTT
TTTCTCTGAGATGCCTTTTTGGAAACCCCACACATTCACAGCTTGCTTGG
CTCCAGGGTATCATGAAGGCCCAAGTTGGCCAGCAGTTGGAGCTAGGGTT
TCCTTGCTAACTTTCCTTCTCAGTGTGCTTAGAGCTGGCAAGAAGTCAGG
AGGCTCCCAGGTCCTGCCCAACAGCCTAAATAAAACCTTTTTATTGGTTC
TTCATGAATTTCACATCATGCACCCCAATCCCACTCATCTCCCCCCTTCT
ACCTGCTCTCTACCCTTGCATCTTCACCCTCAACAAAGAAAAAATGTATC
ATTGTGGAAGATTAGTGTGTCGTAGTGTGTCCCACAGAATATCCCTTTGT
CCACACTTCTTTGCTTGCAAATAGTCATTGCAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTATTGATGAAATGCTGAAGTGCATGAAGGGAC
TGGTCTTACACACTCCAATGTACCCGCTCTCCATGACACAGGGCAACAAC
AGGATATCCAAGAAGAGTTCCAGTATTGATAGAGTAGGAAAAGGCAAAGC
CCTCGCATCAGATCAACAAGTCATTGCAATGACTATTTGCAAGCAAAGAA
GTGTGGACAAAGGGATATTCTGTGGGACACACTACGACACACTAATCTTC
CACAATGATACATTTTTTCTTTGTTGAGGGTGAAGATGCAAGGGTAGAGA
GCAGGTAGAAGGGGTTTTATGAGCGCCCACTGCCCTNNNTNNNNNNNTNN
NNNNNNNTNNNNNNNTNNCCCCCCCCCTAAAAAAAAAAAAAAAATTTTTC
CGGGGGGGGTGTTTCCTTTTCGCTCCCTTTTTTTTTCCCTCCCCCCTTTT
CCCCCTCTTTTTTCCCCTCCCCCCCTTTTCCCCCCCCCCCCCCCCCCTTA
TTTACCCCCTCCCTCTGTCCCTCCTTTTTTCCCGCCCCCCTTTTTTTTTC
TCCCCCCCCCTCCCCCTTTTTCCCTTTTCCCCCCCCCACCCTTCCCCCTT
AAACCCCCCTTCCCCCTTTTTCCATTTTCCTCCCTCTCTCCCATTTTACC
CCCCCCCCACCCCACCTTTTTTTCCCCATTAATTTATCCCCTCTACCCTC
CCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_f24.b1 MSMg01no232_f24.b1 CHROMAT_FILE:
MSMg01no232_f24.b1 PHD_FILE: MSMg01no232_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:51 2005
         (320 letters)



>mm_chr13_36748229_36748948
          Length = 720

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  ttgctttcataggtcagggggcaatttacaaatatcaaatatttccaaataacaggcgag 71
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttgctttcataggtcaggaggcaatttacaaatatcaaatatttccaaataacaggcgag 461

                                                                       
Query: 72  ggtggtgaaaggtgtgaggccaccactactgcttgtgtcccaaggtagtgtagaaatagc 131
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 460 ggtggtgaaaggtgtgaggccatcactactgcttgtgtcccaaggtagtatagaaatagc 401

                                                                       
Query: 132 atggggctccctctgcccatggggaaatgctggatccaattttattagagtcttacaaga 191
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atggggctcactctgcccatggggaaatgctggatccaattttattagagtcttacaaga 341

                                                                       
Query: 192 tagttcttccccaaatctgggtccccatttccctcttgtgagcatattattcaacctcta 251
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 340 tagttcttccccaaatctgggtccccacttccctcttgtgagcatattattcaacttcta 281

                                                                       
Query: 252 ccgtggactttcattctgacaaagacaagagtgccagccattcatggggaagcctttttc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccgtggactttcattctgacaaagacaagagtgccagccattcatggggaagcctttttc 221

                    
Query: 312 tctgagatg 320
           |||||||||
Sbjct: 220 tctgagatg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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