BAC Information

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BAC

Clone NameMSMg01-232H24
Chromosome13 (Build37)
Map Location 22,196,515 - 22,196,831
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2
Downstream geneV1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232H24.T7 (MSMg01no232_h24.b1)MSMg01-232H24.TJ (MSMg01no232_h24.g1)
ACCAG398985AG398986
length731776
length of high quality
(start - end)		321 (45 - 365)230 (74 - 303)
definitionCHROMAT_FILE: MSMg01no232_h24.b1 PHD_FILE: MSMg01no232_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:00 2005CHROMAT_FILE: MSMg01no232_h24.g1 PHD_FILE: MSMg01no232_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACTATAAGGATCCAGGCTGTGAACTTGCATATCCTTGAAACAGC
TCATCTTAACTTTATCCCAGAACTAAGCAGCAAAGAGCAACAATGCTTGC
TGGCTTGCTTTTAGAAAATCAGGATAAATGAGGTAGATTATATACCTCAG
GCTCTTGGGAGCTGAACTCATGGGAACATCCATCTATCTAAAAATCAAAT
CCATCCTGTCTTTTAAATTAATCTCCTTTAACATTTACCAAATAATGTAA
GAGCTAAGTCACCTCTCTCCTCTGACCGTCCACTTCAATAGAAGTCACTT
ACTACAAGTGCCAGATTCTGGTCTCACGCCGCGATTCAAAGTTTGGAAAC
AGGAATAGTGGACTTGAACCCCACCACCTCCAGGAAAGCTAGCATTAAAA
AGAAAAAAATGTTAATATTTTCCACCAGGACTTGGAGTTATTGATTGCAG
CAATTTTTACAGATTCCACTCTTTGAATGAACAGTTAACATTTATTCTAA
AGACAATAACGAATGCTAATGTGCTTTCTATTAATGTCTGGAGTATACTT
CATTATATGCAGATAGTCAGGATGGTATTGTAATTTATAAGATTCTCTGA
TATAGGCAGCAATTATCGATTTGTCATAAGGCAGTTGAAAGGTAATAACT
GACATTTCTAAAGTAATGAAGCCACCTGGAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTGCAGNGTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTGGGGGTGCCCCTGCTTGCTGTCTCTAAAGAATCAA
GGGGCTGGGATTATAGGATGCTGATTCATAGGATAATCAAAAGGGAACCT
GGAATGAATGACTGGATATGTAAAATAAAAGACTGGGCTTTGCATCTACA
AGAGATGAGCTATCCAAAGAATGTTTGTAGAATAGCAAGAGAAAGCTGCT
TGGAGAATATCTGGAGCAGAAAAATTTTTTTAGAGGTAGAGAAAGAGAGC
GAGGAAANGAGTTTAAATAATTTCCCCCCCCCCCCCCCCCAAATTTTTTT
TATAAAGTTTTTTTATATTACCCCCCCCCTCCAAAAAAAAAAAAAAAATT
TGGGGGGGGGGGTTTACCCTTTTATCCTCCTTTTATTTTCCCCCCCCCCC
CTTTTCCCCCCCTTATTTTTCTCCCCCTCTCCTCTAAATCCCTTCACAAT
ACTCACTTTTTTATCCCCCTTCTCCTTTTTCCCTATCCTTTTCTCCGCCC
CCACCTTTTTTTTTATCCCCCCTCCCCCCCCTTTTTTCTCTTTCCCCCCC
CCCCCACTTTTCCTAATTATACCCGCTACCCCCTTTTTACACTTTCCTCT
CTTTCCTCCCTTTTTACCCCCCCCACTCTTCTATTAATTTTTACTTATTT
TTTTTAGCTTTTCTCTCCTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_h24.b1 MSMg01no232_h24.b1 CHROMAT_FILE:
MSMg01no232_h24.b1 PHD_FILE: MSMg01no232_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:00 2005
         (321 letters)



>mm_chr13_22196311_22197031
          Length = 721

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctactataaggatccaggctgtgaacttgcatatccttgaaacagctcatctta 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcctgctataaggatccaggctgtgaacttgcatatccttgaaacagctcatctta 462

                                                                       
Query: 65  actttatcccagaactaagcagcaaagagcaacaatgcttgctggcttgcttttagaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actttatcccagaactaagcagcaaagagcaacaatgcttgctggcttgcttttagaaaa 402

                                                                       
Query: 125 tcaggataaatgaggtagattatatacctcaggctcttgggagctgaactcatgggaaca 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcaggatgaatgaggtagattatatacctcaggctcttgggagctgaactcatgggaaca 342

                                                                       
Query: 185 tccatctatctaaaaatcaaatccatcctgtcttttaaattaatctcctttaacatttac 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tccatctatataaaaatcaaatccatcctgtcttttaaattaatctcctttaacatttac 282

                                                                       
Query: 245 caaataatgtaagagctaagtcacctctctcctctgaccgtccacttcaatagaagtcac 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 281 caaataatgtaagagataagtcacctctctcctctgaccgtccacttcagtagaagtcac 222

                            
Query: 305 ttactacaagtgccaga 321
           |||||| ||||||||||
Sbjct: 221 ttactagaagtgccaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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