Query= MSMg01no233_m03.b1 MSMg01no233_m03.b1 CHROMAT_FILE:
MSMg01no233_m03.b1 PHD_FILE: MSMg01no233_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
(675 letters)
>mm_chr13_90463276_90464351
Length = 1076
Score = 1137 bits (588), Expect = 0.0
Identities = 639/668 (95%), Gaps = 20/668 (2%)
Strand = Plus / Minus
Query: 5 gaattctcaggagtcaagaaacagccctggaaaagcttggccaatgatccctgactttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 826 gaattctcaggagtcaagaaacagccctggaaaagcttggccaatgatccctgcctttct 767
Query: 65 aactacttgcaccatggagaaagccaacacagaaagatgaagcaaaatatattggaaata 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aactacttgcagtatggagaaagccaacacagaaagatgaagcaaaatatattggaaata 707
Query: 125 tgatggcttactgtcatgctgtactagaacctgtggga-ttcccctaccctgcagtggaa 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 706 tgatggcttactgtcatgctgtactagaacctgtgggatttcccctaccctgcagtggaa 647
Query: 184 acaaacattatgaaactacaacttgtggttgtcatctatttaagccttcctacattcaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acaaacattatgaaactacaacttgtggttgtcatctatttaagccttcctacattcaaa 587
Query: 244 gctattgctgagaataaaactaattgcccactatttcagggacagaagaaaaaaagctgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gctattgctgagaataaaactaattgcccactatttcagggacagaagaaaaaaagctgc 527
Query: 304 cacagatgtgagcatgcacttcctttccaaaagaaaaagcaatgtgactaaccttgaaga 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 526 cacagatgtgagcaggcacttcctttccaaaagaaaaagcaatgtgactaaccttgagga 467
Query: 364 gtttggacaagtcacttggacctttctcccttaagagtcacttagttgactagagagatg 423
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtttggacaagttagttggacctttctcccttaagagtcacttagttgactagagagatg 407
Query: 424 ccaagtttcactatctgaaaacaattgagaagacataggtatcctttagctgcaaatact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccaagtttcactatctgaaaacaattgagaagacataggtatcctttagctgcaaatact 347
Query: 484 tctctgccccagagcttgttctcataagaaagtctcttcaactaatgccaagggtaactg 543
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 346 tctctgccccaaagcttgttctcataagaaagtctcttgaactaatgccaagggtaactg 287
Query: 544 ccctgctgaagatctcaatgaggtttggcaaattggttgacagcaggtagcagagctttg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccctgctgaagatctcaatgaggtttggcaaattggttgacagcaggtagcagagctttg 227
Query: 604 caatctgacaaatcctgctctcaaaatagcagacttctctctacatattggaagaatcag 663
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 226 caatctgacaaatcctgctctc-------------------tacatattggaagaatcag 186
Query: 664 aaaactta 671
||||||||
Sbjct: 185 aaaactta 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_m03.g1 MSMg01no233_m03.g1 CHROMAT_FILE:
MSMg01no233_m03.g1 PHD_FILE: MSMg01no233_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
(635 letters)
>mm_chr13_90348716_90349750
Length = 1035
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%)
Strand = Plus / Plus
Query: 1 ttagattaaagccttgactcctaatatgactgtatttgaatataagccttattaaggtaa 60
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 201 ttagattaaagccttgactcctaatatgactgtatttgaagataagttttattaaggtaa 260
Query: 61 ttaagataaaaatcaaaacaaagcagtgatgttggtttccttaccaaaagtgggagcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagataaaaatcaaaacaaagcagtgatgttggtttccttaccaaaagtgggagcaac 320
Query: 121 accaagaatgcctgtgcacacagaaaatgtcatttgaaaacataactacaggaggcaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaagaatgcctgtgcacacagaaaatgtcatttgaaaacataactacaggaggcaacc 380
Query: 181 atatctgtagatcaaggagtttttaggagaagccagtcctgcccacaccttgatctggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatctgtagatcaaggagtttttaggagaagccagtcctgcccacaccttgatctggaa 440
Query: 241 cttacaactttcagcactgtgagactaatttctgtgatttaaaccacccagtctgtggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttacaactttcagcactgtgagactaatttctgtgatttaaaccacccagtctgtggtt 500
Query: 301 ttgttagggcagtcaatctgtagtagttacaaggggctaaccatatataaatgtgcatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgttagggcagtcaatctgtagtagttacaaggggctaaccatatataaatgtgcatac 560
Query: 361 gtaagcatttgaaatgccttgtgtcatataagcactttcatatctgtaatataaagagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagcatttgaaatgccttgtgtcatataagcactttcatatctgtaatataaagagac 620
Query: 421 tttataggttggcatgcaaatatgtcataaatatgacataagaattcttgaaccattgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttataggttggcatgcaaatatgtcataaatatgacataagaattcttgaaccattgtg 680
Query: 481 ttgaaaacaatgtaatgtatatccaaccataatagggcagtatttgctcacatgtgtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaaaacaatgtaatgtatatccaaccataatagggcagtatttgctcacatgtgtaat 740
Query: 541 ttgtaactactcaagatgcatatggtcagatactcactttccttcaaggacacaactaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtaactactcaagatgcatatggtcagatactcactttccttcaaggacacaactaat 800
Query: 601 acagttctccagactattagttgttactttgtat 634
|||||||||||||||||| |||||||||||||||
Sbjct: 801 acagttctccagactatttgttgttactttgtat 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
