Query= MSMg01no234_b05.b1 MSMg01no234_b05.b1 CHROMAT_FILE:
MSMg01no234_b05.b1 PHD_FILE: MSMg01no234_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:56 2005
(328 letters)
>mm_chr13_89765498_89766225
Length = 728
Score = 540 bits (279), Expect = e-158
Identities = 312/323 (96%)
Strand = Plus / Minus
Query: 5 gaattccttccaggttagtgaagacctctgtgggaataacagtaaatttaacaataaagg 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 527 gaattccttccaggttagtgaagacctctgtgggaataacagtaaaattaacaataaagg 468
Query: 65 aatcattaaaagagcatctcaaaatgccgatgaggcaagcgggctttttccaggtttcag 124
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 467 aatcattaaaagagcatctcaaaatgccgatgagggaaacgggctttttccaggttccag 408
Query: 125 ttgctgcctgggaaggtgaaccgtggttgtcttctgtattcaggtggacttacttttggc 184
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 407 ttgctgcctgggaaggtgaaccttggttgtcttctgtgttcaggtggacttacttctggc 348
Query: 185 tcattatactgcaccagagactcaagatgcacatcaagacattatggtctttgttccaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 347 tcattatactgcaccagagactcaagatgcacatcaagacattatggtctttgtttcaga 288
Query: 245 cttcttttgccaatatacaaacatttctctctatcttattgggtcacctagtttctgtca 304
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 287 cttcttttgccaatatacacacatttctctctatcgtattgggtcacctagcttctgtca 228
Query: 305 cacagcacttgttcccagcctca 327
|||||||||||||||||||||||
Sbjct: 227 cacagcacttgttcccagcctca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_b05.g1 MSMg01no234_b05.g1 CHROMAT_FILE:
MSMg01no234_b05.g1 PHD_FILE: MSMg01no234_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:56 2005
(643 letters)
>mm_chr13_89618908_89619950
Length = 1043
Score = 1143 bits (591), Expect = 0.0
Identities = 632/650 (97%), Gaps = 13/650 (2%)
Strand = Plus / Plus
Query: 1 cctacatgagttgatctcatatactgtcagtttctgacatatctgccaacagcccccctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 cctacatgagttgatctcatatactgtcagtttctgacatatctgccaacagtccccctt 259
Query: 61 ttttgtcactcatctcctagtctaccaagagcaacttatctgcccctgtgggttgacctc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 t---gtcactcatctcctagtctaccaagagcaacttatctgcccctgtgggttgacctc 316
Query: 121 cctagagtcctttaccacctagtacttctctgctaaaactgaaggaagtgtgacatgggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 317 cctagagtcctttaccacctagtacttctctgctaaaactgaaggaagtgtgacatggag 376
Query: 181 aaaacaacccgtttgcctcgagctttaaaataattcagtggaagagagagtatttcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaacaacccgtttgcctcgagctttaaaataattcagtggaagagagagtatttcaaga 436
Query: 241 gtcacctactaccagcctttctcctgagtccttgagtggttttgacagaatgtcacttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtcacctactaccagcctttctcctgagtccttgagtggttttgacagaatgtcacttgg 496
Query: 301 cccaaagcctaacttcttttaagtattccttccgaagtctttgtaagtaaataattggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cccaaagcctaacttcttttaagtattccttccgaagtctttgtaagtaaataattggag 556
Query: 361 gagaatgtagatgacaaaaaacaaaaaacaaaaa--aaaaaacaa-caa-caa-caaaaa 415
||||||||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||
Sbjct: 557 gagaatgtagatgacaaaaaa---aaaacaaaaacaaaaaaacaaacaaacaaacaaaaa 613
Query: 416 aaaa--aagaggaagtaattatattagtctatgtatgagaagggctgttaattttctttg 473
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 614 aaaacaaagaggaagtaattaaattagtctatgtatgataagggctgttaattttctttg 673
Query: 474 tatttaaaggaatgctgtcactttaagtctatacttaagactaaagtttaaagaagcctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatttaaaggaatgctgtcactttaagtctatacttaagactaaagtttaaagaagcctg 733
Query: 534 ttgctaagggtagctaaggaaaactgaggggaaaatgtttgtacgtaaatctcttttctc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgctaagggtagctaaggaaaactgaggggaaaatgtttgtacgtaaatctcttttctc 793
Query: 594 agattgaataagtcagatagcagttggcagaggtcagganagagaaaaga 643
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 794 agattgaataagtcagatagcagttggcagaggtcaggaaagagaaaaga 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
