Query= MSMg01no236_n14.b1 MSMg01no236_n14.b1 CHROMAT_FILE:
MSMg01no236_n14.b1 PHD_FILE: MSMg01no236_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:31 2005
(244 letters)
>mm_chr13_36385188_36385831
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Plus
Query: 1 agcagtgttcactggcattgggaaaaagcagccggtctttcatgtgtcttaccccccttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agcagtgttcactggcattgggaaaaagcagccggtctttcatgtgtcttacaccccttt 260
Query: 61 tcagtattccctcccgccccagaatgaaaaatattttggcatcaccatgcttttgtctgc 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtattccctccagccccagaatgaaaaatattttggcatcaccatgcttttgtctgc 320
Query: 121 tttcagagcgggtaccacctgccttcatagcccaggggagccctccatgtgtctcctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagagcgggtaccacctgccttcatagcccaggggagccctccatgtgtctcctgga 380
Query: 181 ggtggtggcctgacacatggaggtgtgtgagtagtgccagacccatgtgctgaggaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggtggcctgacacatggaggtgtgtgagtagtgccagacccatgtgctgaggaaggg 440
Query: 241 gagg 244
||||
Sbjct: 441 gagg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no236_n14.g1 MSMg01no236_n14.g1 CHROMAT_FILE:
MSMg01no236_n14.g1 PHD_FILE: MSMg01no236_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:31 2005
(289 letters)
>mm_chr13_36545462_36546149
Length = 688
Score = 485 bits (251), Expect = e-141
Identities = 277/291 (95%), Gaps = 11/291 (3%)
Strand = Plus / Minus
Query: 1 tttgctgcttaagttccatttagaaaacaaaacaactacaactgtagcctctgctaacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 tttgctgcttaagttccatttagaaaacaaaacaactacaactgtagcct-tgctaacac 427
Query: 61 agatcacttcttgtgtcccctggcacctgcatcatagtggacaagcccaagtgtgggcct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 426 agatcacttcttgtgtcccctggcacctgcatcatagtggacaagtccaagtgtgggtct 367
Query: 121 tgtcactgaggtccctagaaggagctgaaactgtctgaactgtgctgttgacagagacag 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtcactgaggtccctaaaaggagctgaaactgtctgaactgtgctgttgacagagacag 307
Query: 181 aaaagcagggtctgtaggcatgtcagctcatttcagttccaacatggatccctaaaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaagcagggtctgtaggcatgtcagctcatttcagttccaacatggatccctaaaatac 247
Query: 241 gtgcc-----atttttatcagatatgcttctgtgttcatgatgcagaagtg 286
||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 246 gtgccagcaaa-----atcagatatgcttctgtgttcatgatgcagaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
