BAC Information

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BAC

Clone NameMSMg01-237G16
Chromosome13 (Build37)
Map Location 86,141,888 - 86,142,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G16.T7 (MSMg01no237_g16.b1)MSMg01-237G16.TJ (MSMg01no237_g16.g1)
ACCAG402371AG402372
length731738
length of high quality
(start - end)
346 (377 - 722)346 (384 - 729)
definitionCHROMAT_FILE: MSMg01no237_g16.b1 PHD_FILE: MSMg01no237_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:14 2005CHROMAT_FILE: MSMg01no237_g16.g1 PHD_FILE: MSMg01no237_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTTTAAATTGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCCATTAGTGCGGGCTTTTCTTAAGTGTATCATTTGAAAT
CAGAAGACTTGCCCTAAATCCATCCTATAATTCCTAGAGGTAATCTACAT
AATGGTCAGGCACAAAAGAAACTTTTGCCTTATGCCTGTTTCCCTCAGTC
TTACTGGCAAATTCATCTATCCGGCTGTTGAGACATTGCTACCATTGGAA
CCTCCATTTTGGGGACTCCAATATCAATTTAAGAACAACTGAGCCGGGCA
TGGTGGCATACTCCTTTAACCCCAGCACTCAGGAGGCAGAGGCAGCCGGA
TTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGGGAGGTCGGGTATTCAG
TCTTGTGGATTTTCTGTAAGGAAACAACCATTGTTGAACTAACATGACAA
CATACAGTAAGCTAGCTACTCTAATAAACCCCCTTTTAATATATATAATT
TACACATTAATATACTATATTAAATGTATATTGAATATAATATTAATATA
TTATACTAAATACTTTTCTCTATTCTGGCTTTCTAAAGAATGCTAATATA
ATGATTAAATGTAATTTACATAGAATCAAATACAGTGGCTGACACTTTGT
AATTAATTGCAGTTTCTGACTCAAATTAATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGATCTCAGAATATGGAAAGAT
CTCTCCTGCTCATGGATTGGCACCATTAATATAGTCAAAATGGCCATCTT
GCTGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACCC
AATTCTTCACAGAGTTAGAAAGGGCAATTTGCAAATTCACCTGGAATAAT
AAAAACCTAGGATAGCAAAAACTATTCACAACAATAAAAGAACCTCTGGG
GGATTCAAGCTTTACTACAGAGCTTTTGTGGTAAAACCTGCATGGTACTG
GTACAGTGACAGATAGTGTAGATCACCGCAATAGAATTGAAGACCCAGAA
ATGAACTCACACACCTATGGTCAAAGGAGTGAAAACCATCCAGTGGAAAA
AAAAGGACAGCATTTTCATCAAATGGTGCTGGCACAACTGGCGGTTAACA
TGTCGAAGAATGCGAATTGATCCATTCTTACCTCTTTGTACAAAGCTAAA
GTCTAAGTGGATCAAGGAACTCCACATAAAATCAGAGACACTGAAACTTA
TAGAGGAGAAAGTGGGAAAAAGCCTCGAAGATATGGGCATAGGGGAAAAA
TTCTTGACTAGAACACCAGTGGCTTGTGCTATAAGTTTGAGAATCTACAA
ATGGGACCTCATAAAATTGCAAAGCTTCTTTAAGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g16.b1 MSMg01no237_g16.b1 CHROMAT_FILE:
MSMg01no237_g16.b1 PHD_FILE: MSMg01no237_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:14 2005
         (346 letters)



>mm_chr13_86141688_86142433
          Length = 746

 Score =  607 bits (314), Expect = e-178
 Identities = 338/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcaggaggcagaggcagccggatttctgagttcaaggccagcctggtctacaaaggga 60
           |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 actcgggaggcagaggcaggctgatttctgagttcaaggccagcctggtctacaaagtga 260

                                                                       
Query: 61  ggtcgggtattcagtcttgtggattttctgtaaggaaacaaccattgttgaactaacatg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcaggtattcagtcttgtggattttctgtaaggaaacaaccattgttgaactaacatg 320

                                                                       
Query: 121 acaacatacagtaagctagctactctaataaacccccttttaatatatataatttacaca 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacatatagtaagctagctactctaataaacccccttttaatatatataatttacaca 380

                                                                       
Query: 181 ttaatatactatattaaatgtatattgaatataatattaatatattatactaaatacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 381 ttaatatactatattaaatgtatattgaatataatattaatatattatattaaacacttt 440

                                                                       
Query: 241 tctctattctggctttctaaagaatgctaatataatgattaaatgtaatttacatagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctattctggctttctaaagaatgctaatataatgattaaatgtaatttacatagaat 500

                                                         
Query: 301 caaatacagtggctgacactttgtaattaattgcagtttctgactc 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatacagtggctgacactttgtaattaattgcagtttctgactc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)