BAC Information

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BAC

Clone NameMSMg01-237K21
Chromosome13 (Build37)
Map Location 104,423,981 - 104,424,265
singlet/doubletsinglet
Overlap genenone
Upstream geneCd180, Mast4, EG621312, EG432800, LOC432801, LOC100040045
Downstream genePpia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237K21.T7 (MSMg01no237_k21.b1)MSMg01-237K21.TJ (MSMg01no237_k21.g1)
ACCAG402559AG402560
length822747
length of high quality
(start - end)
283 (133 - 415)237 (111 - 347)
definitionCHROMAT_FILE: MSMg01no237_k21.b1 PHD_FILE: MSMg01no237_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:34 2005CHROMAT_FILE: MSMg01no237_k21.g1 PHD_FILE: MSMg01no237_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTACAACTTAAAACCCCAAATACAACCCACCATAACCNCCCCAANNNCNN
NNCGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCAAAGTCATTTGCCTTGAAAAGAAATGAAATATTTTCTCTA
TTGTCCCAAAGCCCATTTTAGACTTTTAAACGCTCTATCTGAGACAAAAT
TCCTGTTATTGCTGCTTTTTTGGGTAGAGCAGAACTCATGTTGGATGCCT
GTGCTAGGAAGCTGTTTGCCTTACAGGCAGCAAAGCCAGTGAGGTTCTTT
CTGAAGTCCTCAATGGGACATCAGAAATTAAATGCACTCTGCTCTTCCCT
GGGCTCTGATGTCACACAGTGTCCCTTTGTATTTTACCATGTACCACCCT
GGCTTTATGAGGCAAGTAGGTTTTGTCACACCCCACTAATGATCTTCTAA
GGGGAGGAATTGTGACTCATTCTTTGTATCACCCACAACATTTAGCAGCT
TATTCTACAAAGGTTGGGGCCCACTGGATAGAAAGCTTGGGCTAAGCTCA
TTCTAATGATGGCAGTGTGCTTCTTCGTTTCATTTGATGGCGCTTCTGTG
CTCCTGTTTCTCCATGGGTTACTTCCATGTGTCCTGTGGATAACAGGATT
GTATAGGTTACCACTTAGAGTACAAAGCAATGTGTTATACTCATGGACGA
ATTAAAGTTTTATCATTTTTAAAGAAGTGAAGAGGTTAAACACCATAAAT
GGCAATTTTCTTAGTGTACATTCCCGAAATTGCGAGGAATTGCTTTGGTC
CTCTAAATGATGGTATAATAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAACTTTTCAGCTGGGAAACAAAAGTACCAGTGAGTACAGCTT
TATTACGCAAGTCTGGTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTA
TCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGAACT
TTATCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGG
TTAAGGCAGGGCAGATTCTGGACGAAATTCAGGACAATCTATCAGAAGTA
AAGCGGTGTTAGAGAGTAGGAGCAAAGAAAAAATATGGTGCACAGAATTA
TTATACCCCCCCCTCCCAGGGTCTTGAACCCAAGGAAAAGTTAAGGTCAG
GTACGAATACCTGGAAGAGAAATTAAAAGAGGGGAGAAGAAAAAAAGAAA
AAAAAAAAGATCAATTAGAGAAGCCAGTTCTTAGTAGTTCTAAATCAGAT
AAAAAGGCTATTAGGGCCTAAAAGGCGCTCTCCCGAACAGGTGAAGCCAC
TGGACAATTAACAAAGATCGTCCAGGGACCTCAGGAGTCCTTCTCAGATT
TTGTGGCCAGTATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATT
GTCCACCCTAAAGTTGTAGATCAAGATTGCAAAGGGGAACTTCAGGTTCT
CTGTTCTTGTCCTCAAGTTGTCTTTTCTATATCACAAGGGGACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_k21.b1 MSMg01no237_k21.b1 CHROMAT_FILE:
MSMg01no237_k21.b1 PHD_FILE: MSMg01no237_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:34 2005
         (283 letters)



>mm_chr13_104423781_104424465
          Length = 685

 Score =  478 bits (247), Expect = e-139
 Identities = 275/289 (95%), Gaps = 10/289 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaaatattttctctattgtcccaaagcccattttagac-----ttttaaacgctcta 55
           |||||||||||||||||||||||||||||||||||||||||         ||| ||||||
Sbjct: 485 aatgaaatattttctctattgtcccaaagcccattttagacaagca----aaatgctcta 430

                                                                       
Query: 56  tctgagacaaaattcctgttattgctgc-ttttttgggtagagcagaactcatgttggat 114
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 429 tctgagacaaaattcctgttattgctgctttttttgggtagagcagaactcatattggat 370

                                                                       
Query: 115 gcctgtgctaggaagctgtttgccttacaggcagcaaagccagtgaggttctttctgaag 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcctgtgctaggaagctgtttgccttacaggcagcaaagccagtgaggttctttctgaag 310

                                                                       
Query: 175 tcctcaatgggacatcagaaattaaatgcactctgctcttccctgggctctgatgtcaca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcctcaatgggacatcagaaattaaatgcactctgctcttccctgggctctgatgtcaca 250

                                                            
Query: 235 cagtgtccctttgtattttaccatgtaccaccctggctttatgaggcaa 283
           ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 249 cagtgtccctttggaatttaccatgtaccaccctggctttatgaggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)