BAC Information

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BAC

Clone NameMSMg01-260M05
Chromosome13 (Build37)
Map Location 25,159,176 - 25,159,474
singlet/doubletsinglet
Overlap geneDcdc2a
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
Downstream geneNrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260M05.T7 (MSMg01no260_m05.b1)MSMg01-260M05.TJ (MSMg01no260_m05.g1)
ACCAG403338AG403339
length945737
length of high quality
(start - end)
49 (43 - 91)299 (85 - 383)
definitionCHROMAT_FILE: MSMg01no260_m05.b1 PHD_FILE: MSMg01no260_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:57 2005CHROMAT_FILE: MSMg01no260_m05.g1 PHD_FILE: MSMg01no260_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATT
CTTTTGATTTTGCCTAATGAGTGGAAAACTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGCGTGTCTTGTGTGGTGGGTTTTGGGT
TAGGGCGGACTTATTGATATGCCGTGTTGCGGCGCCGTCTACTGTCCCGC
CACGACAGCGGGCGCGGCCGGGAGGAGGGGAGAAATAATAAAGGGAAGGA
GAGGGAGGTTCGATGGTGCCCGGCGGGGGGGGGAGTGGACGGACGAGCAC
TCAGAAGCAGAGAGCAGAAAGTACTGGACACGAGAAGCACCAAGGGGGGA
GTGGCGTGAGGGGGTGGTGGGGAGAGAGGCGGTAGTGGGAGTTACGTAAG
TAGAGGTGCAGTGGTGTAGGTGAACTAATTGAGAAGGAGAGCAAGGTGGG
CGAGGCAGGCAGGCGGAGTGGTGTTGCTCCCCCCCCCGGTGGGAGGGGGG
TGGAGGGCGCGAGAGGAAGAAGGTGAGAAAGAGGGAGAGAGGGAGCGAGA
AGGGAGAAAAGGCGAGTGGCAAAGAAGAAGAATGAGAACAGCGTGTTGTG
CGAGCAGGCAGTAGGGGAGAGCGAGGGGGCGATAAGGTGGAGGTAAGAAG
GGCGTCGTGGAACGGCAGAAGTTGGAGCTCATAGGTGAAACAGATGGATG
ACGAGGAAAGCAAACAAGGCGAGTATGAGCGGGGAGATCGAAGCGCAGGT
AAATGAGGGCGTGGGATTGCGACTGAAAGAGGGAAGCGGAGGGCGATGAT
GGAGTGTGGAGGGGGGATGTGGGGTTGAGTGGGTGGTGGGTGCGGGTGAG
TAGAAAGGGTGGATAATGTGGGACGGGGAGAGGTAGAGGCAAGCTCTGAC
CGAGCAAGACGAGACAGTGCAGGTCGCCGAGTAGAGGCTGCTGAT
CACCTTTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACATTAAGCTGAG
CATAATTATTAACCATGCTACGGGAAGGCATGGGGACTCTGTGGCTGAGA
TCACTAATCTTTACCTTGCATATTCCGAGTTCTCAGGGGAGTTCAAAGGG
GCGAACACTAAAGGGTTAATCAGTTTTCCTTTAACTCTAGGAAATCATTG
CAGGTGGTGTCAGCAGACTTGGGCATACTGATTTATTGAAGAGTAAAAGA
GAATTCCTATATATTCCTCTAATAGCGGTGGGAGCCTCTCTCTGCTCTTT
AGACCATTCCTCAGTTTCAGCAAAACTGTTCCATGAGAAGTATTTCTTTA
TAAGGCAAGCAAGGCCAATGCACACCCCCCGATAATCCTAACATGTAAGA
TGTTACTGTCTTAGTCAGGGTTTCTATTCCTGCACTAACATCATGACCAG
TAAGCAAGTTGGGGAGGAAAGTGTTTATTCGGCTTACATTTCCATACTGC
TGTTGATCACCATATGATGCAGGACTGGAACTCAAGCAGGTCAGAAAGTA
GGAGCTGATGCAGAAACCTTGGAGGGATGTTCTTTACTGGCTTGCTTCCC
CTGGCTTGCTCAGCCTGCTCTCCTATAGAACCCAGACTACCATCCCTGAG
ATGGTTCCACCCACAAGGGGCCTCCCCCCTTGATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_m05.g1 MSMg01no260_m05.g1 CHROMAT_FILE:
MSMg01no260_m05.g1 PHD_FILE: MSMg01no260_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:57 2005
         (299 letters)



>mm_chr13_25158976_25159674
          Length = 699

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacattaagctgagcataattattaaccatgctacgggaaggcatggggactctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacattaagctgagcataattattaaccatgctacgggaaggcatggggactctgtgg 260

                                                                       
Query: 61  ctgagatcactaatctttaccttgcatattccgagttctcaggggagttcaaaggggcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagatcactaatctttaccttgcatattccgagttctcaggggagttcaaaggggcga 320

                                                                       
Query: 121 acactaaagggttaatcagttttcctttaactctaggaaatcattgcaggtggtgtcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactaaagggttaatcagttttcctttaactctaggaaatcattgcaggtggtgtcagc 380

                                                                       
Query: 181 agacttgggcatactgatttattgaagagtaaaagagaattcctatatattcctctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 agacttgggcatactgatttattgaagagtaaaagagaattcctataaattcctctaata 440

                                                                      
Query: 241 gcggtgggagcctctctctgctctttagaccattcctcagtttcagcaaaactgttcca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcggtgggagcctctctctgctctttagaccattcctcagtttcagcaaaactgttcca 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)