BAC Information

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BAC

Clone NameMSMg01-261P11
Chromosome13 (Build37)
Map Location 86,022,918 - 86,023,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261P11.T7 (MSMg01no261_p11.b1)MSMg01-261P11.TJ (MSMg01no261_p11.g1)
ACCAG404200AG404201
length726724
length of high quality
(start - end)
525 (46 - 570)452 (77 - 528)
definitionCHROMAT_FILE: MSMg01no261_p11.b1 PHD_FILE: MSMg01no261_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:29 2005CHROMAT_FILE: MSMg01no261_p11.g1 PHD_FILE: MSMg01no261_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTTCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAAATCTATTCCATTGGT
CTACTTGCCTGTCTCTATACCAGTACCATGCAGTTTTAATCCCAATTGCC
CTGTACCAAAGCTTTATGTCATGACTGGTGATTTCCTCACAGGTTCTTTT
ATCCTTGATCAGAGTTTTTGTTATCC
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCATAATCAGTGTACTGTCC
TTGCTGAGGTATATTTAGAAGGGCCAAGTTTGCAAGAATGTGATCAAGAT
GGGTTTGAGAAAACAGCAATTCCTTCCTTTTTAGACTCTGAGAGATGCAC
TTTTGGGCAGTGTAGGATTAATGTAATATGTTAGAAGGGGGAAATTAATT
TATAGAACATATTACTTCAAAAGCAGTCTTACTCGGGTAATACAAATTCA
TTAAAATGTATTTGGAAATATTTACGAATGTCAAGGCTACTCATGAGCTC
TAAAGTCAATCTGCATCATTTTGAACCACTTAGTAGAAATATGTATCTTC
TGATTTTAGGGTAACAAACGATTAGCCACATTTCTTGCCTACATCACCTA
AAACTTTTTGGTACCTATTTCATCATCTGTGGAATGCAGACGTTAAATTC
ATAGTTCGTGAACTTAGGGCCCCTAGGAAGAAGTTGGGAGATATAGATAT
TTTGTAGATCCATCTGCGTATTTTTAAGACATGCGAATATGGAAGCTAAT
TCTTTCAATTTGCTAGGGTTGCATGAACCTTGTGCTTACCTTCTAGAAGA
AACGTCCTTCTTTGTCCTCCTCCAAATAGCTTAAAAGCGTTGTTATTTTC
TCACCCCTTTGGCTTTCATACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_p11.g1 MSMg01no261_p11.g1 CHROMAT_FILE:
MSMg01no261_p11.g1 PHD_FILE: MSMg01no261_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:29 2005
         (452 letters)



>mm_chr13_86022718_86023569
          Length = 852

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgcataatcagtgtactgtccttgctgaggtatatttagaagggccaagtttgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atttgcataatcagtgtactgtccttgctgaggtatatttagaagggccaagtttgcaag 591

                                                                       
Query: 61  aatgtgatcaagatgggtttgagaaaacagcaattccttcctttttagactctgagagat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 aatgtgatcaagatgggtttgagaaaacagcaatttcttcctttttagactctgagagat 531

                                                                       
Query: 121 gcacttttgggcagtgtaggattaatgtaatatgttagaagggggaaattaatttataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcacttttgggcagtgtaggattaatgtaatatgttagaagggggaaattaatttataga 471

                                                                       
Query: 181 acatattacttcaaaagcagtcttactcgggtaatacaaattcattaaaatgtatttgga 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 acatattacttcaaaagcagtcttacttgggtaatacaaattcattaaaatgtatttgga 411

                                                                       
Query: 241 aatatttacgaatgtcaaggctactcatgagctctaaagtcaatctgcatcattttgaac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatatttacgagtgtcaaggctactcatgagctctaaagtcaatctgcatcattttgaac 351

                                                                       
Query: 301 cacttagtagaaatatgtatcttctgattttagggtaacaaacgattagccacatttctt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 350 cacttagtagaaatatgtatcttctgattttagggtaacaaatgattagccacatttctt 291

                                                                       
Query: 361 gcctacatcacctaaaactttttggtacctatttcatcatctgtggaatgcagacgttaa 420
           |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 290 gcctgcatcacctaaaacttcttggtacctatttcatcatctgtggaatgcaaacgttaa 231

                                         
Query: 421 attcatagttcgtgaacttagggcccctag 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 attcatagttcgtgaacttagggcccctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)