BAC Information

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BAC

Clone NameMSMg01-262F09
Chromosome13 (Build37)
Map Location 71,817,776 - 71,977,712
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262F09.T7 (MSMg01no262_f09.b1)MSMg01-262F09.TJ (MSMg01no262_f09.g1)
ACCAG404467AG404468
length741741
length of high quality
(start - end)
333 (65 - 397)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no262_f09.b1 PHD_FILE: MSMg01no262_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:58 2005CHROMAT_FILE: MSMg01no262_f09.g1 PHD_FILE: MSMg01no262_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,817,776 - 71,818,108)(71,977,472 - 71,977,712)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCGGAATT
CCATCTTCTCCAGACAAATTTCATTTTGATCGTTATGAATTTTCATCTTG
TTGGGTAATGCTCACCCATACAAATGTCAGTAATTGTTTTGAAATGGTAT
CCTCTCTATACCTCATAGCCATATCTAGACCAGTGCTGATTAAATAATGG
TCCACTGTATCCTAACGAGCTGCCATGGAGTTAAACATTACATTAGTTTA
AACCTCAAGCCATATTCCAGCTGACACTGGGATTTCCAGTAAGCAAATAT
GCATTATTTTATCAATTTTCAGGAATTAAGGAAACTCATTTTGTGCATGG
TAGCCAGGAGGCACCACTTGGGAAAAGAGACAGTTGTTTGAAAGAAAGTA
CTGCCCCCCCACTGGGAGAGGTCAAGGTGCTCACTGAAGAATATACAAGT
GAATGTTTAAGTCTCAGTCCAACTTTATTTTTCCATATATATTTAACCCA
AAGCTCTAAACACAGAGTGGCTCTCCCTGAAACTCTGTGTTCTGACAATT
AAATCACTACTTAATGTGATCCTATAATTACTTTTGACCTACACTCTCTA
ATGATAATAGGACCCTGTTCTACACATTTCCCTGGCTGAATGATCATATC
TAATTCTTCCTCATTATAACTGTTGCCTTGCACAGTTGTTTACGTGTATT
GTCCCCCTTCTTTCTTTATTTGTTTGTCACATCCCTGACTN
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCCTCCAAATCTCAAACATA
GGGATTAAAAGAGTGTGTTGCTGTACTCAACTTGATTTGCTTTTATAAAA
TTGGCATAGTTACACCATTCACATTTATTTAACATGAGTATTGTTTTATC
AAGGCACAAGTTCTCCATTTTATTGTTTTCTACAGGGCTGTCTCCCCACA
TTCTTTGCTGTTCTCTTGCCTTCTTTTGTTGGCTGAAACATTTCTTTTAA
GAATTTCATTTTAGCCGGTTGTGTTGTCACACGCCTTTAATCCCAGAACT
CGGAAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGTCAGCCTGGTCTAC
AAAGTGAGTCCCAGGACAGCCCCCCCTATACAGAGAAACCCTGTCTCGAA
ATACCAAAAATAAAAATAAAAAAAAAGAATTTCATTTTGATGTATGTATT
TAGCACCACCACATTCACTGTACTTTCTTTACTTCTCGGCTTTCTCTATT
TGGATTTATATGTTTTATTACCCTCTCACAACTCCGTTCAACAGTTCTTT
GATCTGATTCAATCTTCCCTCCCCGCCCCCTTCTTTGAAGCCTCCCTTAT
TTTCCACCACATTTAAATTCTCACTTTTTTTTCCTACATGGTATGCTTTT
TTTCTTAACACAAGCTTTTATTATTCCTATGTTTTACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_f09.b1 MSMg01no262_f09.b1 CHROMAT_FILE:
MSMg01no262_f09.b1 PHD_FILE: MSMg01no262_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:58 2005
         (333 letters)



>mm_chr13_71817576_71818308
          Length = 733

 Score =  574 bits (297), Expect = e-168
 Identities = 324/333 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatttcattttgatcgttatgaattttcatcttgttgggtaatgctcacccatacaaa 60
           ||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||
Sbjct: 201 caaatttcattttgatcgttacgaattttcatcttgttgggtaaggcccaaccatacaaa 260

                                                                       
Query: 61  tgtcagtaattgttttgaaatggtatcctctctatacctcatagccatatctagaccagt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagtaattgttctgaaatggtatcctctctatacctcatagccatatctagaccagt 320

                                                                       
Query: 121 gctgattaaataatggtccactgtatcctaacgagctgccatggagttaaacattacatt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gctgattaaataatggtccactgtatcctaatgagctgccatggagttaaacattacatt 380

                                                                       
Query: 181 agtttaaacctcaagccatattccagctgacactgggatttccagtaagcaaatatgcat 240
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 381 agtttaaacctcaagccatattccagatgacattgggatttccagtaagcaaatatgcat 440

                                                                       
Query: 241 tattttatcaattttcaggaattaaggaaactcattttgtgcatggtagccaggaggcac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtttatcaattttcaggaattaaggaaactcattttgtgcatggtagccaggaggcac 500

                                            
Query: 301 cacttgggaaaagagacagttgtttgaaagaaa 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 cacttgggaaaagagacagttgtttgaaagaaa 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no262_f09.g1 MSMg01no262_f09.g1 CHROMAT_FILE:
MSMg01no262_f09.g1 PHD_FILE: MSMg01no262_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:58 2005
         (241 letters)



>mm_chr13_71977272_71977912
          Length = 641

 Score =  412 bits (213), Expect = e-119
 Identities = 234/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggcctccaaatctcaaacatagggattaaaagagtgtgttgctgtactcaacttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcctccaaatctcaaacatagggattaaaagagtgtgttgctgtactcaacttgatt 382

                                                                       
Query: 61  tgcttttataaaattggcatagttacaccattcacatttatttaacatgagtattgtttt 120
           || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 381 tgtttttataaaattggcatagttacaccattcacatttatttaacacgagtattgttct 322

                                                                       
Query: 121 atcaaggcacaagttctccattttattgttttctacagggctgtctccccacattctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaaggcacaagttctccattttattgttttctacagggctgtctccccacattctttg 262

                                                                       
Query: 181 ctgttctcttgccttcttttgttggctgaaacatttcttttaagaatttcattttagccg 240
           ||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||
Sbjct: 261 ctgttctcttgccttctcttggtggctaaaacatttcttttaagaatttcgttttagccg 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)