BAC Information

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BAC

Clone NameMSMg01-262F24
Chromosome13 (Build37)
Map Location 93,308,068 - 93,308,188
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070
Downstream geneSpz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262F24.T7 (MSMg01no262_f24.b1)MSMg01-262F24.TJ (MSMg01no262_f24.g1)
ACCAG404492AG404493
length725723
length of high quality
(start - end)
330 (51 - 380)479 (70 - 548)
definitionCHROMAT_FILE: MSMg01no262_f24.b1 PHD_FILE: MSMg01no262_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:01 2005CHROMAT_FILE: MSMg01no262_f24.g1 PHD_FILE: MSMg01no262_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAATACACGC
GGAATTCATCCAGGCCATTTCCTTTAAACAAGGAGCGTCCTTAACCAGCT
TCAGACCCTTCCTTAAGGGACAGCTTATATGTAAGTGCATCTTTCTCTAC
ACCACGCCTCTGTCCTTCTTTTTGCTAGTTGAGACTGAGGTGTGGTTACA
GGAATGGATGAGGCCACAGGCAAGCAAGTAGGTTTCTAAGTCAGGGCTGA
GCTCAGGCAGGAAAGCCCATGGTGTCTGTACATGACCTGTGTCTGGATGT
TGCTGCAAAGAAAACAAGCATTGTTTATTTCTCACACTTTTTAATCTACT
GAGGTCTTTCACCATATCTACCCTTTTAACACCTACAGGAAGAAAACCAC
ACAGAATAGTTCCACCCTGTAATAGAACCCCCACGGCCACCACTGAAAGA
AAAGCAATTCAGCCAGCCCCTGATGAAATGTGTACTGTGGTCCCATTTAC
ACAGCGGCCTACCACAGCAGACCCTTGTGAAAAGCCTTCACTCAAGGAGT
TAGAAGGTTCACATGTTACTTTTCTTTTCCGTATTTATTTTAGTATGCAC
TTTTTTAAAAGTGTTAACCCTTATACATGGCTTGTCTGCGTGTCTATTTC
ACTGATACGCCGTTCAAGTACATGATTGTAGGTAACCGTACTCTATTTTG
CCTTGGCCTGACCCTGCCCTTTTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAATTCCAAAGTCTTTTTTCTCCATGGTGACCAG
TTGTGGGTTTCTGTGTTAATTGTCATCGACTACACAAAGTAACTTCTCTG
ATGAGAGTTGAGCATCTGCGGATATAACAATGTGTTATTGAGAGTCATTT
TATTGCTATGTTAATTTAGTAGAATGAGAGTAGGCTTTCCCCTAGGGCCC
CTGACTGGCTATCTAGCTATCTAGCTTCAGGTTCTTAGCCTTGCTGACAG
TGTCAGGGATGGGCTGGATCTCTTTGAGGAATGTTCAGAAAGAAGCAGCA
GTTGGTTACTCCCATAATGTCCGTGCCAGTGTTGAACCAGTGTGTCCTGC
AGGCAGCTTGCTGTTTCTGTACCTCACAGAGTTCAAGGTAAGTAAGATTG
ACGGGTTTCTCTCTTTTCTGGAAGCACATGTATCACCTTCCAGCACTGTG
AATACTACCCAATGGGAGTGAACTAAATGAGTATGAATACTACCCAATGG
GAGTGCACTAAATAAATACTAGCCAATAGGAGCGCACTAAATGAATGTGA
ATACTACCCCATGTTAGTGCACTAATTGAATGTGAATACTACCCATTGTG
AGTGCACTAAATGAATACTACCCAGCGGCAGTGTACTACATGACTGTGAT
TACTACTCCATGGTAGTGCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_f24.b1 MSMg01no262_f24.b1 CHROMAT_FILE:
MSMg01no262_f24.b1 PHD_FILE: MSMg01no262_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:01 2005
         (330 letters)



>mm_chr13_93307867_93308596
          Length = 730

 Score =  201 bits (104), Expect = 4e-56
 Identities = 117/124 (94%), Gaps = 6/124 (4%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcatccaggccatttcc---tttaaacaaggagcgtccttaaccagcttcagaccc 58
           ||||||||||||||||    |   ||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattcatccaggcca---gcaagtttaaacaaggagcgtccttaaccagcttcagaccc 266

                                                                       
Query: 59  ttccttaagggacagcttatatgtaagtgcatctttctctacaccacgcctctgtccttc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccttaagggacagcttatatgtaagtgcatctttctctacaccacgcctctgtccttc 206

               
Query: 119 tttt 122
           ||||
Sbjct: 205 tttt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)