BAC Information

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BAC

Clone NameMSMg01-262H09
Chromosome13 (Build37)
Map Location 71,786,258 - 71,786,568
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620473, Adamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262H09.T7 (MSMg01no262_h09.b1)MSMg01-262H09.TJ (MSMg01no262_h09.g1)
ACCAG404555AG404556
length736740
length of high quality
(start - end)
647 (41 - 687)311 (74 - 384)
definitionCHROMAT_FILE: MSMg01no262_h09.b1 PHD_FILE: MSMg01no262_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:07 2005CHROMAT_FILE: MSMg01no262_h09.g1 PHD_FILE: MSMg01no262_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTAAGATTCCACC
TCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCACTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGAT
ACCCAAGATATAAGATACAATTTCCTAAACACATGANACTCAAGAAAAAT
GAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCCTGAAATTAAATAAAATGTCATA
AAGACCCATGTTGAGTTTAAGGACATTTATCTCAAATAGTGTTAATCTCA
GTGAAATTTCAACTATTTTAGTTAATAGATATAATCTTGAATTTCTCTAT
GTGGAGCAATTCCCTAGACATTCTGATTTCTTGAATACACCTTTGAGAAG
GTGTGGAGCTATTTTTTGGTGGCCTGCTTTGCACAAAAGCAGCCCATTTA
TTTGCAAAGCCATGCAGATAAGTCTCATGGTCAGGGTGTAGTGTGCTGAG
GGTATTTGAAAAAATAGTCTTGTGGTGACTAACAGGAGAGTGTAACATCA
TAGCAGACATGGATAAACCCCCCAGCAGGTCCTGACAGGCAACTCTCCAC
GTGATGCCTTTGGCACATTCTCATGTCCAAAGTGTACGGGTCACAGTGAA
TCCCACCTCCTTACAAGTCTTATTTATTTTTGCCTGATCACAGTGTTCCC
TGAACCAGTTGATGTTATCCATTGTTTCAGCAGATAATGGGGATGAGACA
TATATGTTTCTATATTTTATTATGCAGCGCCTAAGGCTCAATTTTTGTCT
GTCTATTTTTAATATACATATGTTTTTGCATATTAAACTTTTCTCGGTTT
GCTGCTCTCTACCTGCTTTTTCTTCTATTCAATTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_h09.g1 MSMg01no262_h09.g1 CHROMAT_FILE:
MSMg01no262_h09.g1 PHD_FILE: MSMg01no262_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:07 2005
         (311 letters)



>mm_chr13_71786058_71786768
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcctgaaattaaataaaatgtcataaagacccatgttgagtttaaggacatttatctc 60
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 actcctgaaattgaataaaatgtcataaagacacatgttgagtttaaggacatttatctc 260

                                                                       
Query: 61  aaatagtgttaatctcagtgaaatttcaactattttagttaatagatataatcttgaatt 120
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatattgttaatctcagtggaatttcaactattttagttaatagatataatcttgaatt 320

                                                                       
Query: 121 tctctatgtggagcaattccctagacattctgatttcttgaatacacctttgagaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctatgtggagcaattccctagacattctgatttcttgaatacacctttgagaaggtg 380

                                                                       
Query: 181 tggagctattttttggtggcctgctttgcacaaaagcagcccatttatttgcaaagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagctattttttggtggcctgctttgcacaaaagcagcccatttatttgcaaagccat 440

                                                                       
Query: 241 gcagataagtctcatggtcagggtgtagtgtgctgagggtatttgaaaaaatagtcttgt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagagaagtctcatggtcagggtgtagtgtgctgagggtatttgaaaaaatagtcttgt 500

                      
Query: 301 ggtgactaaca 311
           |||||||||||
Sbjct: 501 ggtgactaaca 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)