BAC Information

Click to search

BAC

Clone NameMSMg01-262K06
Chromosome13 (Build37)
Map Location 21,338,818 - 21,339,103
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262K06.T7 (MSMg01no262_k06.b1)MSMg01-262K06.TJ (MSMg01no262_k06.g1)
ACCAG404686AG404687
length758734
length of high quality
(start - end)
344 (43 - 386)536 (69 - 604)
definitionCHROMAT_FILE: MSMg01no262_k06.b1 PHD_FILE: MSMg01no262_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:20 2005CHROMAT_FILE: MSMg01no262_k06.g1 PHD_FILE: MSMg01no262_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCAGTCTTCTACCCCCACCTCTCACATGTTAAAGCCTAACATGTGCA
CCCCAGGCATGTGCACCCCATCCCTTCCAACAGCTTTTGTAATTGATTTC
TACTGTCAGAGTGAGCACAGGATTGAAGGGGGAGGAGACAGGACGGCTTT
TCACGCCTCAGCCTATAGCTGCATAGTGTTAAGATGGGCTGTGCGGCCCG
TCCCTTTATTATCCTGGGAATTGAACCCAGGACCTCACTCACCCTGACTG
AGATCCTGGTCTCTCGCGTTTTCTCTGTCTCTCCCTCTCCCTCTCCCTCT
CCCTCTCCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTATTCCTCTTT
TTCTCCCACCCCCCCCCGTGCTTTTTATATTTCCCTCTCCGTCTCTTTCC
CATTCTTTCCCACCTTTTTCCTTCGTATCTCGTTCACTATCATCTTATTC
TCTCTTTCTATCCTCTTCTCTCCCCGACTCTCCTACCCCCTTTCCCCCAT
TCCTTCCTTTCCACTATACCTTTTTTCTTCAACCCTTTTCTTCCTACTTC
TTTCTACCTTACAGCCTCTATTTTTTACCACACTCCCTCCTATTTTACCC
ACCACTCCTCTTTATTTCTCCTTCCCCCCTCCCTCCTTTATCTCAACCTT
TGCTTACTCCCCCTACCTTTCTTCTTTTTTCCTCTTCATATGTCTTCCCA
CTACTAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGTTTTGCTTGGTTTTTTGGTTTGTAATATG
GTTCAACATATAGCACCTTTGTTAACCTGCCCCTTGTTCAACCCCCATCG
AGTGGGGTCAGTGGCTTAGATGCCCACCTGGGGCCAAGTGGAAAGCGTCT
GGCAGCCCTCTGTGTCCACCTGCCCAGAGCATAGGAGGAACTCTGGCCGG
GCGTGGGCTATCCTCCCTCCTCCTCTTTCCCCTGGCCCCATTAGTTCTCA
CACACAACCACCTGTAATTCCAGCTATCAACTTCAAGGAATCTACTACCC
TCTTCTGGTCTCCATGGGTACCCAAATATACATGTACATTTACTCATGCA
CACACGCACCCAAGCACTCCCCACCCCGACTTTAAAAATCATTCGTATTA
AAAATACAGTAGCCAAACCCAGAAGAGATGGCTTGCAGAGGACTAGGATT
TAGTTTCCAGCACTCACAGGGCAGTTCGTAAACAACTTATAATTCTAGTT
TCAGGAGATCAGATGCTTGTTTCTGATTTCTACAGCATCAGCACACATGT
GGCTGCAGAGATATACATGTAGACAAATGCTTATATGCATAAAACATTTT
TAAATATAGTAACTGGGCTAACTCAGCTGTAAGATCTGGAGCTCCCAGCT
TATGTAGTACTTCCATGATCTGCCCCATTACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_k06.b1 MSMg01no262_k06.b1 CHROMAT_FILE:
MSMg01no262_k06.b1 PHD_FILE: MSMg01no262_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:20 2005
         (344 letters)



>mm_chr13_21338614_21339357
          Length = 744

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagtcttctacccccacctctcacatgttaaagcctaacatgtgcaccccag 64
           |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattctccagtcgcctacccccacctctcacatgttacagcctaacatgtgcaccccag 264

                                                                       
Query: 65  gcatgtgcaccccatcccttccaacagcttttgtaattgatttctactgtcagagtgagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatgtgcaccccatcccttccaacagcttttgtaattgatttctactgtcagagtgagc 324

                                                                       
Query: 125 acaggattgaagggggaggagacaggacggcttttcacgcctcagcctatagctgcatag 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 325 acaggattgaagggggaggagacaggacggctcttcacgcctcagcctatagctgtatag 384

                                                                       
Query: 185 tgttaagatgggctgtgcggcccgtccctttattatcctgggaattgaacccaggacctc 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttaagatgggctgtgcggcgcgtccctttattatcctgggaattgaacccaggacctc 444

                                                         
Query: 245 actcaccctgactgagatcctggtctctcgcgttttctctgtctct 290
           ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 445 actcaccctgactgagatcctgggctctcgtgttttctctgtctct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)