BAC Information

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BAC

Clone NameMSMg01-264L02
Chromosome13 (Build37)
Map Location 94,762,417 - 94,910,183
singlet/doubletdoublet
Overlap geneCycs-ps3, Lhfpl2
Upstream geneEG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb
Downstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L02.T7 (MSMg01no264_l02.b1)MSMg01-264L02.TJ (MSMg01no264_l02.g1)
ACCAG406169AG406170
length7261,008
length of high quality
(start - end)
314 (46 - 359)135 (123 - 257)
definitionCHROMAT_FILE: MSMg01no264_l02.b1 PHD_FILE: MSMg01no264_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:57 2005CHROMAT_FILE: MSMg01no264_l02.g1 PHD_FILE: MSMg01no264_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,762,417 - 94,762,723)(94,910,049 - 94,910,183)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACTCTATATAACCACAGAACCACAGGCCATTGGCTTGTGGGT
CAGTAGCTGGACCAGGCAGCTGAGTCAGCTGGCTGCAAGCTGGATGACTG
GGCTCAGCAGCCCGCATCTTGCCTGGGCATGTTTCTTAGAAGGGTAGAGA
GAGTGAGTGAAATCATACCAGCCACCATCTGATCCAACCCGGTGCTATGG
TAACATTTCACTAACAGAAGTGCGGAGTCACATGGCCAAGGCCAGATTCA
AGGATTAGGAAGGCGGACCTCTTCTTCATGAAGGAAACTCGGGTGCGTGG
CCAAGATTATTGTTTGCACCCACCCCGCCCTGCCACCCTCATCTGCTCCA
GCCAGTGCTGGCTTCACCCATGAGCAGATAAACCGCCCTGTCAGAAACTC
CAACATAGTGACGGCCTACCACCCACAAAGCTAGATCTTCACCCCCATAA
AAGGTCACCAGAAAGTTCTCTGTTGAGTGTTTACAACAAAGCGTATGGCC
CCTAACTTGGTTTTTGTTTGTTTAGCTTTGTGGGGCCAGTGTTAGGAGAT
CATTGTCCCCCATGTCTTCATGTCTTTCCAGGCATTAGCTGTCATGTGTT
CCTAAATATAATTTCAAGTGTTTGTACCATTCCTGTTGACACTGGGGAGC
CTTTTCCATAACAGTGTCTTCTGCCN
TTATGGTTTGTACTTTTTTACAGCGCAAAATATTTTNNNNNTNCCTCCGA
TGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGTCTCTAGGAGAAAGAACTGACAGG
CTGTTTGTCCTGGCAATGTGGGAGAAACATACAAGCTCTCTGGCCTCTGG
GTTTGTGACCGTCTGGAGGGAGGGAGGAAGAAAGAGAGAGGAAGGTAAGG
ATTGAGAGGTAAATGGATATAGAGACAGAGACAGGCAGACAGACAGAATT
ACATATAACACACTCGGGATACATACGACAACGAGCGTGAAACAAAGAGC
CGGGGGCTAGTTCCCTTACTGGGAATTTTTATGCGAACCGCGGATACAAC
GACATGACCTAAAAAACAATTTTCAATGGTATCCCCCCCCCCCCCCCCCC
CCCCATTTATTATATTTTGTTATTGTTAGTCGTGATCAATATTTACTTAA
TGCATATAAAAAAAAAAAAATTGTTTCGTGTGGCCGGGGAAAAACATACA
ACGAATACATACAATATTGTCAGAATCTCATTAAATTAATATATAAAATT
TTCATTCAATAATAAAAATAATATATTTGTATAAATTTACTTTTAACCAA
TTTGCAGAAATAAACAAAAAATAAATATATAATTACGAATAAACGATAAA
AATAAAGTCTAAGACAGAGAAGACTTCTTATTAATAAAATACNCTCATTA
TATTTACATAATTAATAATCACTCGAATATTATCCTCTACAATATAATTA
AGATATTAATATAATATTGATGATTAATTACTATGCAGATGCCTACCAAT
TATTATCTTTAATTACATCTAGCATTATTACTAATAACTCAAACATAACA
CATGTTAAAATTATATCTCGTGAGATTAGTATGGACAACATCGACTAAGT
GAGAGTAATGTTAGTCATCATATATATAATGTGAGCAATGCTAGATGTGA
TCATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l02.b1 MSMg01no264_l02.b1 CHROMAT_FILE:
MSMg01no264_l02.b1 PHD_FILE: MSMg01no264_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:57 2005
         (314 letters)



>mm_chr13_94762213_94762926
          Length = 714

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacactctatataaccacagaaccacaggccattggcttgtgggtcagtagctg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacactatatataaccacagaaccacaggccattggcttgtgggtcagtagctg 264

                                                                       
Query: 65  gaccaggcagctgagtcagctggctgcaagctggatgactgggctcagcagcccgcatct 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccgggcagctgagtcagctggctgcaagctggatgactgggctcagcagcccgcatct 324

                                                                       
Query: 125 tgcctgggcatgtttcttagaagggtagagagagtgagtgaaatcataccagccaccatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcctgggcatgtttcttagaagggtagagagagtgagtgaaatcataccagccaccatc 384

                                                                       
Query: 185 tgatccaacccggtgctatggtaacatttcactaacagaagtgcggagtcacatggccaa 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 tgatccaacccggtgctatggtaacatttcactaacagaagtgcagagtcacatggccaa 444

                                                                       
Query: 245 ggccagattcaaggattaggaaggcggacctcttcttcatgaaggaaactcgggtgcgtg 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct: 445 ggccagattcaaggattaggaaggtggacctcttcttcatgaaggaaactcggttgcatg 504

                  
Query: 305 gccaaga 311
           |||||||
Sbjct: 505 gccaaga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_l02.g1 MSMg01no264_l02.g1 CHROMAT_FILE:
MSMg01no264_l02.g1 PHD_FILE: MSMg01no264_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:57 2005
         (135 letters)



>mm_chr13_94909849_94910383
          Length = 535

 Score =  230 bits (119), Expect = 2e-65
 Identities = 131/135 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtctctaggagaaagaactgacaggctgtttgtcctggcaatgtgggagaaacatac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 caagtctctaggagaaagaactgacaggctgtttgtcctggcaatgcgggagaaacatac 276

                                                                       
Query: 61  aagctctctggcctctgggtttgtgaccgtctggagggagggaggaagaaagagagagga 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 275 aagctctctggcctctgggtttgtgaccatctggagggagggaggaagaaagagagagga 216

                          
Query: 121 aggtaaggattgaga 135
           ||| ||||| |||||
Sbjct: 215 agggaaggagtgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)