BAC Information

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BAC

Clone NameMSMg01-264O11
Chromosome13 (Build37)
Map Location 21,054,207 - 21,207,242
singlet/doubletdoublet
Overlap geneAoah, Olfr1370
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264O11.T7 (MSMg01no264_o11.b1)MSMg01-264O11.TJ (MSMg01no264_o11.g1)
ACCAG406320AG406321
length692746
length of high quality
(start - end)		289 (404 - 692)449 (75 - 523)
definitionCHROMAT_FILE: MSMg01no264_o11.b1 PHD_FILE: MSMg01no264_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:13 2005CHROMAT_FILE: MSMg01no264_o11.g1 PHD_FILE: MSMg01no264_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(21,054,207 - 21,054,495)(21,206,797 - 21,207,242)
sequence
CCAGTTTCAAAAAGAGGCGCGGAATTCACATGTTGACTAAAAAATCTTCC
CAGAAGAAAGGGCTGAGATCAGTGTAATGCAATTTCTTTCAGCCTTTCCT
AGGTATTCCCTTGGTGACATTTGTAGTTAATTAAGTAGGTGTGTTGTTAC
AATTTCTCCATAAATAATGTGTTGTATATAATATACTGAACGTTGTGTTT
TATTTTAGCAATACATCAAATCTCCTTGATCTTTTCTAATGTACATAGCG
TTTCAGAGTAAGGTTCCTTTCTCTTGTGGACATTCTTGTTTTTTTCAAAG
TTTCTTTATCCTCAATAATACTGCAATTAACTTCTTGTGCCGNCCTNTTC
CACATGNACACAAAGATTTCTATAGGGAAAATTGTTCAATCAAAATAATA
CATTATTAATTTCATGAGCCTTCCAAATTAGGCTTTACCAATTAATATTC
TCACAGCTGTGTGACAACATGATTCCCCATATTCTGATAATACAGTATAT
TGGTTTTTTATTTTGCTTTGTGTTTTTCTGTTGTTTGGGTTTTTTTATTG
TTTTTGTTTTTAATGTTCTTCCAATCTAATAATATTTCATTATTTTTCTA
ATTTTCAATCTCTTGATTATGAGGGAGCTTGAGCATTTTTCCATAAACAT
CTGCCCCACCTTTGTCCCAATTGGTTATTCCCTGCCATGCAT

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAAAATGCATGGCACACTTAAATTT
CACCCTTATAAATAAATCTTTCACTTATGTCTCACTTCTCTGAATAATTT
ACTGTGTGATACAGGAAAAATAAGAACATTGTTGAATCCAGTTTTCCATG
AAAAAAATTAGGAATAATGCAAACTCTTATTGTAGGGGCTAAAAAAATAT
CAAATGACCAAAAACTGTTTGCAGCTCAGAGTAACTTAGGGGCACAAGAA
TTGGTATAAAAGTAATTTATAATCTTGCAAAATGTGGGTTAAGATTGTCT
AGCATTCTCCCAAATTCTGGTAAACTCTACCAAAGCATTAAGATCTGTCA
GGTTCTTTTCTCTACCCACTATACCTGATATATGCACTAACGTATTTATC
TGTTATTTTTAACAAGTAAAAAATACTCTTGGAGGGGTGGATGGAGGGGA
AACTGTGGGTGTGATGCATTTTATGATAGAAGAATCTATTTTCAATAAAG
ATCACAGTTTAAACAGGGATATATCGCCGTTTAACGTTATTTGCGTATTG
GGTGACATTACGTAATGGGTGTGATGATAAGTATGAGATGAATGAAAAGA
TAATTTGTTGTTTTTTTGGTGTTTCAAGACAGGTGGGCTCTGTGATATGC
TGGGGGGGCTTGGAACTCACTTGGGAAACCAGTGTGGGCTTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_o11.b1 MSMg01no264_o11.b1 CHROMAT_FILE:
MSMg01no264_o11.b1 PHD_FILE: MSMg01no264_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:13 2005
         (289 letters)



>mm_chr13_21054007_21054695
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaatttcatgagccttccaaattaggctttaccaattaatattctcacagctgtgtg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaatttcatgaaccttccaaattaggctttaccaattaatattctcacagctgtgtg 260

                                                                       
Query: 61  acaacatgattccccatattctgataatacagtatattggttttttattttgctttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacatgattccccatattctgataatacagtatattggttttttattttgctttgtgt 320

                                                                       
Query: 121 ttttctgttgtttgggtttttttattgtttttgtttttaatgttcttccaatctaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctgttgtttgggtttttttattgtttttgtttttaatgttcttccaatctaataat 380

                                                                       
Query: 181 atttcattatttttctaattttcaatctcttgattatgagggagcttgagcatttttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcattatttttctaattttcaatctcttgattatgagggagcttgagcatttttcca 440

                                                            
Query: 241 taaacatctgccccacctttgtcccaattggttattccctgccatgcat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacatctgccccacctttgtcccaattggttattccctgccatgcat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no264_o11.g1 MSMg01no264_o11.g1 CHROMAT_FILE:
MSMg01no264_o11.g1 PHD_FILE: MSMg01no264_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:13 2005
         (449 letters)



>mm_chr13_21206594_21207442
          Length = 849

 Score =  793 bits (410), Expect = 0.0
 Identities = 437/446 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   aaatgcatggcacacttaaatttcacccttataaataaatctttcacttatgtctcactt 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 649 aaatgcatggcacacttaaatttcacccttataaataaatctttcatttatgtctcactt 590

                                                                       
Query: 64  ctctgaataatttactgtgtgatacaggaaaaataagaacattgttgaatccagttttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctctgaataatttactgtgtgatacaggaaaaataagaacattgttgaatccagttttcc 530

                                                                       
Query: 124 atgaaaaaaattaggaataatgcaaactcttattgtaggggctaaaaaaatatcaaatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atgaaaaaaattaggaataatgcaaactcttattgtaggggctaaaaaaatatcaaatga 470

                                                                       
Query: 184 ccaaaaactgtttgcagctcagagtaacttaggggcacaagaattggtataaaagtaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccaaaaactgtttgcagctcagagtaacttaggggcacaagaattggtataaaagtaatt 410

                                                                       
Query: 244 tataatcttgcaaaatgtgggttaagattgtctagcattctcccaaattctggtaaactc 303
           ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 409 tataatcatgcaaaatgtgggttaagattgtctagcattctcccaaacactggtaaactc 350

                                                                       
Query: 304 taccaaagcattaagatctgtcaggttcttttctctacccactatacctgatatatgcac 363
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taagaaagcattaagatctgtcaggttcttttctctacccactatacctgatatatgcac 290

                                                                       
Query: 364 taacgtatttatctgttatttttaacaagtaaaaaatactcttggaggggtggatggagg 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taacatatttatctgttatttttaacaagtaaaaaatactcttggaggggtggatggagg 230

                                     
Query: 424 ggaaactgtgggtgtgatgcatttta 449
           ||||||||||| ||| ||||||||||
Sbjct: 229 ggaaactgtggttgtaatgcatttta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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