BAC Information

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BAC

Clone NameMSMg01-265A12
Chromosome13 (Build37)
Map Location 20,998,650 - 20,998,943
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A12.T7 (MSMg01no265_a12.b1)MSMg01-265A12.TJ (MSMg01no265_a12.g1)
ACCAG406411AG406412
length967712
length of high quality
(start - end)
281 (98 - 378)305 (3 - 307)
definitionCHROMAT_FILE: MSMg01no265_a12.b1 PHD_FILE: MSMg01no265_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:23 2005CHROMAT_FILE: MSMg01no265_a12.g1 PHD_FILE: MSMg01no265_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTATTTATATACACTTACNCCCCCTCCCCTTCCTTTACAACNNTTTT
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCAACTGAAGTTCCCTCTCACCAGGTGTGTCAAGCTTTTAAA
TAATAAGGGTGCTTAAATTGCAGACTACCACATACAGATACAGACATTTC
TAGGAGAGATTGTTTCACAGCAGACTTCCTGGTATTCTGGCTCTAGCAAT
CTTTCCATCCCCCCTTCAGCAGTGTTCCCTGAGCCACAGATGTAGGTGCT
GTGGTATAGATGATATAAGTACAGATGTACATGTGACATAGATAATATAA
GTATAGATGTAGGTGTGATATAGATAATATAATATAAATATGGATGTGCC
CCCCCTCTAAAATAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTTTT
ATTTTATAATAAATATATTTTTATTTCCCCCCCCTCTTCTATATATAAAT
AAATAAAATCTCTGTTTTTGTGTATGCCTTTTCTTCTCCCAATCAACTAC
TCTATTCACTTTTACATCTAATATTTATTTTATATACATCCTATAATTTC
TTCTATACTGTATATTATCTCTATATCTTCTATTTTCTTCCTTTTTCCAT
ACAACATCTTTACTCCAATGCTCACAATCTCCATCTTATCATATTCTCTT
CTCCCCTAATAATTCCTATTCTCTCTCTTTCCTTATTTTCCTTATTTTTT
CTTCCCTCTATTATTCAAATTTTCTTACTGCCCCTCTATTAATAGTTGAC
GCACAATCATTTCTCTTCTTCCCTCTCTTTTCTTTCTTTCTCTTCATCTC
TCTCCTTCCTCATCTTCTATTTATTTAATTCTTTCTTTTCACTTCCTCTA
TTGTCTTATATTCTTATATTCCTCTTTTAATTTCTCTCCTCTAGTTTTCG
CTCAATATCACCGCATN
GGATCCGCGGAATTCATATCTGCAGTAGTAAGAGGAGCAAAATAGTCTAG
CTTTATCCTTATTTTTCTGTATAAGTGAGTAGAGGGGACCACTCTTGGAA
AATAAACACCAGTCAAAGGCCCACTCTTCAGGGGCTGCCTCTGATGGGGC
CCCATCCAGCTACCCTTTAACAGTGCCACTAGCTGGGAACCAAGCCTTCT
ACACAGAAGCCTCTGGGGACATTTTACCTCCAAAGCATAACACTAAGCCT
TAAAGAAATACTTCCTGTGTGCCATGAGAACCCAACCTTCTCAACCTCTC
CCATTTGTTTTTTTTTCCCCGCANCCCCCATACTTGTTTTCAGAGATTTT
ATTTTCTTCCCATTTTTTGAAAAAAAGAAAGATTGTTTTTCGAGACAGGG
TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT
GGCCTCGAACTCAAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGAT
TAAAGGCGTGCGCCACCACGCCCGGGCTGAAATTTAATTTTCTTAAGTAA
ACTTTAAAGAACTTGAAACCACTTAATGCCTTTTGGCCTTGTTTTCCATT
TAACTAAAAACAAAGCTGTTAAATTGAATCCCTCCGCTATCTCAAAAACC
ATCTGGAAAACCTTTAAAACGCAAAATTCCTTTGGTCACAATAACCTATT
TGTAAAAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a12.g1 MSMg01no265_a12.g1 CHROMAT_FILE:
MSMg01no265_a12.g1 PHD_FILE: MSMg01no265_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:24 2005
         (305 letters)



>mm_chr13_20998443_20999147
          Length = 705

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatatctgcagtagtaagaggagcaaaatagtctagctttatccttatttttctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatatctgcagtagtaagaggagcaaaatagtctagctttatccttatttttctg 267

                                                                       
Query: 68  tataagtgagtagaggggaccactcttggaaaataaacaccagtcaaaggcccactcttc 127
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tataagtgattagaggggaccactcttggaaaataaacaccagtcaaaggcccactcttc 327

                                                                       
Query: 128 aggggctgcctctgatggggccccatccagctaccctttaacagtgccactagctgggaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aggggctgcctctgatggggccccatccagctaccctttaacagtgccactagctgggaa 387

                                                                       
Query: 188 ccaagccttctacacagaagcctctggggacattttacctccaaagcataacactaagcc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccaagccttctacacagaagcctctggggacattttacctccaaagcataacactaagcc 447

                                                                 
Query: 248 ttaaagaaatacttcctgtgtgccatgagaacccaaccttctcaacctctccca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttaaagaaatacttcctgtgtgccatgagaacccaaccttctcaacctctccca 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)