BAC Information

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BAC

Clone NameMSMg01-265B13
Chromosome13 (Build37)
Map Location 100,002,683 - 100,002,957
singlet/doubletsinglet
Overlap geneZfp366
Upstream geneUtp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
Downstream genePtcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B13.T7 (MSMg01no265_b13.b1)MSMg01-265B13.TJ (MSMg01no265_b13.g1)
ACCAG406457AG406458
length846828
length of high quality
(start - end)
281 (93 - 373)290 (124 - 413)
definitionCHROMAT_FILE: MSMg01no265_b13.b1 PHD_FILE: MSMg01no265_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:29 2005CHROMAT_FILE: MSMg01no265_b13.g1 PHD_FILE: MSMg01no265_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTTTATTTTTTCTTTTTTTTATTTCTTTAAAAACCNNNNNCCTCTC
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGATCGAAGTCATCCTCCTGCTCCAGCCTTCTGGGTAGCTGGGACT
ACAGGCGTAGACTGTTGTTCCAGGCAAGAATGACTTAAGAAGGAAGATTC
AAAGAACCTTGGCACTAAAATGAGGATTAGAACAAGTTATCAAGTTAACA
CCTTAAGGATCCATACTGTCTGCTATCCATAAGTTGTCTAAGGAAGGAGA
GATTCCAAGTTAGCTCTAACGTTAGCCAGACCCTCACTTATTTAAGTTGG
GGGCATGGTAAGAGGTTAGCATTCTTTAGTTTGGTGAACTCAAAGCACTA
AGGGGTGGGTTTTTGCTTCNGTTCCCAANACATAACGCTTATGAAATCTT
AAAGAGTTAATTCTCCCCCCCCCTCTTGAAAGAAGAAAAGTCTTCTCGCG
AGGAGGAGCTGGTTGCTTGGTCCCTAACACTGTCGGTTAAGCACTTGCCT
TGAATGTATGAAGTCCTGTGTTGAAACCCCAGCCACACATTAACTGGTGC
AGCGGCCTATGGTCATATTCCAGTCTCTCAGGGAATCATGAGGACCATAA
CTTCAAAGTCTCTTCTCTGCTTATAATGCAAATTCGAAACCTGCCTTAGG
AAAAGTCCTATTTTCCAGAAATAGAAGTCTTAAATACCTCCTTGTGGTTC
TTCTCTGAATGCCAAAGGCTCTTCCAATACCTTATTTGCTTTCCCATTAT
AAACGTACAGAATTCACTGGTCACTATAAATAACTAATCCCGGGAA
TTTTTTTTTTTTTTGCTCTCTTTTTTTTTTTTTTGNNNNNNNNNTTTTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTAAGAAGACAACGGATCATGCAGG
GATGCTGTGCTCAAAAGCTAGGTGACTGTGATCTCTCTAAAATGTATCTA
ACTGTACTCTACCCACCCATACTCTCTTCCTCAAATAAAACCCTCCACCC
TTGTTTGAGAACTCTTGGCAGCTTCTTCAGAACTCCAGAATCACTGCTCT
CGTGTTCGAGCCGGGCCATGCGAAATAAAAACAGGGTTTAGTTGAACACA
AACACAGGGGCCATTGATCTGATTCCTTTGACAGCCTCGGAGCTAAGGTA
CAGGCTGAATAATTTTGTGATCCCCCTANACCAACCCCACAGGGTCAGGG
ACACAGGCTTTCGTCAGCCCCCCCAGGACAACAAAAAAATTAAGACTATG
AATAGTTTATGTCTGGAGCTTTCCTTGTAGTATTGATAAATTTCAAGTCT
CAGGATGCTTCCCTGTGGACAGGAAAGTCTGTGCCCACCTTGAGGTGCAG
AAGGAATAATACTTCTCAGACTTCCTTCTTGTGCCTACTGCTGTAAAACG
GCAAGGTCATTGCGTCTTCATCCACAGTCGTACCGCATCTGACTTACACA
CGAATACACAGAATGAAGGGTTGTTTTCTTTTCCTTTTCAATTACCTCTA
AATTGTATCACATTGAACGAAGATAAGCCTATTTTTTTTTTTTTACGGGA
TTTGTTTAATTCCTTTCCTACAAGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b13.b1 MSMg01no265_b13.b1 CHROMAT_FILE:
MSMg01no265_b13.b1 PHD_FILE: MSMg01no265_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:29 2005
         (281 letters)



>mm_chr13_100002417_100003097
          Length = 681

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggatcgaagtcatcctcctgctccagccttctgggtagctgggactacaggc 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 541 gaattcctggatcgaagtcatcctcctgctccagcctcctgggtagctgggactacaggc 482

                                                                       
Query: 65  gtagactgttgttccaggcaagaatgacttaagaaggaagattcaaagaaccttggcact 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtagactgtcgttccaggcaagaatgacttaagaaggaagattcaaagaaccttggcact 422

                                                                       
Query: 125 aaaatgaggattagaacaagttatcaagttaacaccttaaggatccatactgtctgctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaatgaggattagaacaagttatcaagttaacaccttaaggatccatactgtctgctat 362

                                                                       
Query: 185 ccataagttgtctaaggaaggagagattccaagttagctctaacgttagccagaccctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccataagttgtctaaggaaggagagattccaagttagctctaacgttagccagaccctca 302

                                              
Query: 245 cttatttaagttgggggcatggtaagaggttagca 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 301 cttatttaagttgggggcatggtaagaggttagca 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)