BAC Information

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BAC

Clone NameMSMg01-265D08
Chromosome13 (Build37)
Map Location 34,185,166 - 34,185,448
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a
Downstream geneLOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265D08.T7 (MSMg01no265_d08.b1)MSMg01-265D08.TJ (MSMg01no265_d08.g1)
ACCAG406540AG406541
length787754
length of high quality
(start - end)
---292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no265_d08.b1 PHD_FILE: MSMg01no265_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:38 2005CHROMAT_FILE: MSMg01no265_d08.g1 PHD_FILE: MSMg01no265_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATATTTGCGCCCGCTATCNACTCCTATNNNNANAGATCCGCGNNATTC
NGGTCAGCTTTANCTACTANTANTTTCCNNNTCNNTCTATGCTACTGANA
CCCTGTNCCTTTTNCCCCCGCNNANNANAGCNNTGNNNNGGANANAAAAG
CCNNNNAAAANGGNNNNGGGANNCCNNNANNANTNGNNGNNGTTNTTTTT
GCTTNGCCCCCNNNATGGGCCCTTTTNNNNNNCCTTGTCTTTTTNTTTNN
NTTNTTTCCTNTTNNNTTGTCCCNCTCCTTTCCCCTAAATNNNTCNTCCT
CCCTCTTNNNNNNCCCCGTTTTTTTCGCCACGTGAAAGCTAAGGGTAAAA
NNNNCCTTNTTTTTNCCAAAANCNNNNNNNNGGGGCCTTCTTTCACCCNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAGAAAGAAAGAAGGAGAGAGCCTA
AAAAGAAAAGCNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTNNNNNNNNNNNNNNNNGGGACGCGTCTGAGACAAGACA
GGGGGGGCTGGTNNNNNNNNNNNNNNNNNNNTNNNNCNAAAACCACAACC
CCCCTCTCTCCACTAAACCACACNNNNTNNNNNNNNNTNTTNNNNTNTTT
NNTNTTTNTNTTNNNTTTTTTNNTNTTTTNTNTTCCTCCTTCAACACCCC
CCCCCGCTCAAGACACAACACCCCCCGCACCCCCCTGTCTCTCCCCCNTT
NNTNNTNNTNNNTNTTNNTTNTTNTTTTTATTATAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTGGCCAGGTTTGGTGGTAAAGG
TACCCGTACTTGGTGAGCAATCTTACTGACCCATGCCTATTCATATTTAT
AAGAGATGCACTAAAAAGATGATTGAGCTGGGCGTGGTGGCACACGCCTT
TAATCCCAGCACTCGGGAGGTAGAGGCAGGCGGATTTCTGAGTTTGAGGC
CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAA
ACCCTGTCTCGAAAAACCAAAAAAATTTAAAAAAAAAAAAAAAAAAGATT
GAAATCTCTGAGTCTGTTGTGTCTCAGCCACCCCCTTTATGTCTACTTGA
GGATACTCCAGGTGCCTAGCCGCCCAGTCAAACAAAGCTTTACAATGTCT
CTAGGTCCCCTAATTTCAATAATCATATTAACATCCACCAATTATTTAAA
TATGCTGTCTTCTTTCCTTATTGTAATAATTTTTTTCCCTCTGACTTGAA
TTTTTCCCAGGCACTAGACAATTCAAACAGTCCACAAAAAGATATTACAT
GCAAAAAAACATAGCATAGGAAAAGGTTGCAACTCTTCCCACCAAAGCCT
TCAAGAGGGCACAACATAGGATATTCCGGGATTGGTAGCACCTGAAAAGG
CTAAGCTGTATTAAGCTGTGGTGTGGATTGCTAGTGTCTAAATTCACTGG
CCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_d08.g1 MSMg01no265_d08.g1 CHROMAT_FILE:
MSMg01no265_d08.g1 PHD_FILE: MSMg01no265_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:38 2005
         (292 letters)



>mm_chr13_34185149_34185840
          Length = 692

 Score =  487 bits (252), Expect = e-142
 Identities = 278/292 (95%), Gaps = 9/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattggccaggtttggtggtaaaggtacccgtacttggtgagcaatcttactgacccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cattggccaggtttggtggtaaaggtacccgtacttggtgagcaatcttactgacccatg 241

                                                                       
Query: 61  cctattcatatttataagagatgcactaaaaagatgattgagctgggcgtggtggcacac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 240 cctattcatatttataagagatgcactaaaaagatgattgagctgggcgtggtggcgcac 181

                                                                       
Query: 121 gcctttaatcccagcactcgggaggtagaggcaggcggatttctgagtttgaggccagcc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 180 gcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcc 121

                                                                       
Query: 181 tggtctacaaagtgagttccaggacagccagagctatacagagaaaccctgtctcgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 120 tggtctacaaagtgagttccaggacagccagagctatacagagaaaccctgtctcgaaat 61

                                                               
Query: 241 accaaaaaaatttaaaaaaaaaaaaaaaaaagattgaaatctctgagtctgt 292
           ||||||||||         ||||||||||||||||||||||||||| |||||
Sbjct: 60  accaaaaaaa---------aaaaaaaaaaaagattgaaatctctgaatctgt 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)