BAC Information

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BAC

Clone NameMSMg01-266L21
Chromosome13 (Build37)
Map Location 91,820,909 - 91,821,199
singlet/doubletsinglet
Overlap geneSsbp2
Upstream geneEG435376, Rps23, Atg10, LOC100042959, LOC666889
Downstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266L21.T7 (MSMg01no266_l21.b1)MSMg01-266L21.TJ (MSMg01no266_l21.g1)
ACCAG407647AG407648
length754758
length of high quality
(start - end)
314 (439 - 752)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no266_l21.b1 PHD_FILE: MSMg01no266_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:36 2005CHROMAT_FILE: MSMg01no266_l21.g1 PHD_FILE: MSMg01no266_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCAGGTTTGCCCAGCTTTAAATTACAACAGTGGATTATTGCTA
CGGTCAAAGGGGCAGGTCTATTTCCCCGCTTGATTCCTCTTTCATCCATG
TGTGGACTGGTAGTCCACATGCTGGACTGGTAGTCCACATGCTGGTTTGA
GAGCATTTCTGAGTTTGGACTATTCCACTCTCTGCAGTTTGACTTCTGGA
GTGCTTTTTGGCCAGCCTGGGTCTTGTAATTTAGTGGGTGGAAGATGTGG
CGTAGGACAAGCCCTTCTTCTAAGTAAGATCTAGTTGTGACCATGAGCAT
TTGCTCAGGGTTTTCTTTTGTTTCCCACCCCGCCGCTAGCTTTAGTAGTA
TAAGTCTTGCCTTATTTAACTTGTTTAAAATGAAAACACCTTGTTTCCAT
TCTCATTTGCTGCTTCTATTGATTGACATTCATAGAGGTGTTTGATGAGA
GATGCCTGTGTATTTAAAAAATGTATGGTGTGGCACACATGTGTCTTTAG
TCCTAGCTTTTGGGAGGCAGAGAGGCAGGTGGGTCTCTGTTATGTTTGAG
GCCAGCCTGCTCTGTATAGAAAGTTCCAGGACAGCCAGGGCTGCATATTG
AGACCTCATCTCAAAATCAAACAAAATGAAACAAAAACAAAACAAAAAAT
AAAAAAGTTATGGTGGTGTACATGTTTATATAAATGGTGTCTTGCTAAAG
ATCT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGCTCCTATCCACATGTGGT
GCTCTTACATACACTTAGGCAAGCATGCGCATGAGCGCATATGATGCTAT
GTATATATTTATTTTATTATATGAGTATTATATAAATATATATAAAATAA
ATATTTTAAAACATGTTAAAGTAAGACCCAGATAATAAGTAAGATCACAG
AGCTAGAGGGTCAGAATCATTTAACTACAAAAAGCTGAAAGGAAATTAAG
GGTCAAATATGTTGCATGACTAAGCTAGAAAGGAATTCTGCACCATAGTA
CTCACGATTGTAGTGGTTTTAGATAGCGCCCCCCACCCACTTCTCCTTTT
AAGATGACTGGTGTCATTCTAGCTTCTCAAGAAGGAACGGATTCAATGAC
CCTGTAAGTACTGATGGTGGGGACGGCATCATGCATTATGCCAGTAGAAA
GCAGGAACCAGGTTTTAGTGGGTTTTTTTTTTAATTAAAAAAAACTTGTA
CTGTATTTTCTTTATGGTTAATCATTTATTTTCCTTAAAGGGGTTTCCTC
CTCCTTCCCCTGTCAAATCAGTAAACTGATTAATATAATGCTGTGCAAAA
GATGTGATGTCACGACAAATCCTTGTTCTACTAACCCCTTTCATACTTTC
CAGTTAACGGTACTTCCCTTATTTTGACTTGACTTGGGTTGTGTGGGCCC
AGGAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_l21.g1 MSMg01no266_l21.g1 CHROMAT_FILE:
MSMg01no266_l21.g1 PHD_FILE: MSMg01no266_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:36 2005
         (291 letters)



>mm_chr13_91820574_91821264
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgggctcctatccacatgtggtgctcttacatacacttaggcaagcatgcgcatgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catgggctcctatccacatgtggtgctcttacatacacttaggcaagcatgcgcatgagc 567

                                                                       
Query: 61  gcatatgatgctatgtatatatttattttattatatgagtattatataaatatatataaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcacatgatgctatgtatatatttattttattatatgagtattatataaatatatataaa 507

                                                                       
Query: 121 ataaatattttaaaacatgttaaagtaagacccagataataagtaagatcacagagctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ataaatattttaaaacatgttaaagtaagacccagataataagtaagatcacagagctag 447

                                                                       
Query: 181 agggtcagaatcatttaactacaaaaagctgaaaggaaattaagggtcaaatatgttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agggtcagaatcatttaactacaaaaagctgaaaggaaattaagggtcaaatatgttgca 387

                                                              
Query: 241 tgactaagctagaaaggaattctgcaccatagtactcacgattgtagtggt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgactaagctagaaaggaattctgcaccatagtactcacgattgtagtggt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)