MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-266L24
Chromosome	13 (Build37)
Map Location	34,747,391 - 34,747,702
singlet/doublet	singlet
Overlap gene	none
Upstream gene	OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik
Downstream gene	D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Link	Open Mouse BAC browser

Click to get alignment info.

name	OTTMUSG00000000712 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238568 MGI:3649829
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC193403 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:193403
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619864
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	OTTMUSG00000000720 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435350 MGI:3651663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serpinb6c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97848 MGI:2145481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serpinb6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20719 MGI:103123
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nqo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18105 MGI:104513
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930482L21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435351 MGI:1922249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Ripk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19766 MGI:108212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bphl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68021 MGI:1915271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tubb2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22151 MGI:107861
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042686 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tubb2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73710 MGI:1920960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310047M15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69666 MGI:1916916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 55 ESTs

name	3110004L20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73102 MGI:1920352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620132 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 448 ESTs, 13 Proteins pseudo : _no_value

name	EG666666 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666666 MGI:3643830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	1300014I06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66895 MGI:1914145
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D0H6S2654E (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108161 MGI:1351640
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 3 ESTs, 10 Proteins pseudo : _no_value

name	EG432746 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432746 MGI:3644013
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC666677 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 6 Proteins pseudo : _no_value

name	Prpf4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19134 MGI:109584
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933417A18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66761 MGI:1914011
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666697 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666697
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	1810022C23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69123 MGI:1916373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Peci (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23986 MGI:1346064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000000712 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115647929 GeneID:238568 MGI:3649829
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000712 transcript_id : NM_001076790.1

name	OTTMUSG00000000720 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865894 GeneID:435350 MGI:3651663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000720 transcript_id : NM_001045535.1

name	Serpinb6c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347363 GeneID:97848 MGI:2145481
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine (or cysteine) peptidase inhibitor, clade B, member 6c transcript_id : NM_148942.2

name	Serpinb6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982000 GeneID:20719 MGI:103123
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine (or cysteine) peptidase inhibitor, clade B, member 6a transcript_id : NM_009254.2

name	Nqo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981091 GeneID:18105 MGI:104513
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NAD(P)H dehydrogenase, quinone 2 transcript_id : NM_020282.2

name	Ripk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328466 GeneID:19766 MGI:108212
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor (TNFRSF)-interacting serine-threonine kinase 1 transcript_id : NM_009068.3

name	Bphl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21624608 GeneID:68021 MGI:1915271
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) transcript_id : NM_026512.1

name	Tubb2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859487 GeneID:22151 MGI:107861
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, beta 2a transcript_id : NM_009450.1

name	LOC100042686 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263962 GeneID:100042686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042686 transcript_id : XM_001478636.1

name	Tubb2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378376 GeneID:73710 MGI:1920960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, beta 2b transcript_id : NM_023716.2

name	2310047M15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263964 GeneID:69666 MGI:1916916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 55 ESTs product : RIKEN cDNA 2310047M15 gene, transcript variant 1 transcript_id : XM_884663.3

name	3110004L20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801990 GeneID:73102 MGI:1920352
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110004L20 gene transcript_id : NM_001033167.2

name	EG666666 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263937 GeneID:666666 MGI:3643830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG666666 transcript_id : XM_985275.2

name	1300014I06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115292444 GeneID:66895 MGI:1914145
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1300014I06 gene transcript_id : NM_025831.3

name	EG432746 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94394778 GeneID:432746 MGI:3644013
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG432746 transcript_id : XM_484242.3

name	Prpf4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956073 GeneID:19134 MGI:109584
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRP4 pre-mRNA processing factor 4 homolog B (yeast) transcript_id : NM_013830.1

name	4933417A18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118403291 GeneID:66761 MGI:1914011
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933417A18 gene transcript_id : NM_025750.2

name	1810022C23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387253 GeneID:69123 MGI:1916373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810022C23 gene transcript_id : NM_026947.4

name	Peci (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755025 GeneID:23986 MGI:1346064
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase transcript_id : NM_011868.1

name	OTTMUSG00000000712 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115647930 GeneID:238568 MGI:3649829
definition	codon_start : 1 product : hypothetical protein LOC238568 protein_id : NP_001070258.1

name	OTTMUSG00000000720 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865895 CCDS:CCDS26440.1 GeneID:435350 MGI:3651663
definition	codon_start : 1 product : hypothetical protein LOC435350 protein_id : NP_001039000.1

name	Serpinb6c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:142347364 GeneID:97848 MGI:2145481
definition	codon_start : 1 note : serine (or cysteine) proteinase inhibitor, clade B, member 6c product : serine proteinase inhibitor member 6C protein_id : NP_683744.2

name	Serpinb6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678097 CCDS:CCDS26441.1 GeneID:20719 MGI:103123
definition	GO_function : GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 note : serine protease inhibitor 3; serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6 product : serine (or cysteine) proteinase inhibitor, clade B, member 6a protein_id : NP_033280.1

name	Nqo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9937970 CCDS:CCDS26442.1 GeneID:18105 MGI:104513
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : NAD(P)H menadione oxidoreductase 2, dioxin inducible; NRH: quinone oxidoreductase product : NAD(P)H dehydrogenase, quinone 2 protein_id : NP_064678.1

name	Ripk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328467 CCDS:CCDS26443.1 GeneID:19766 MGI:108212
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : receptor (TNFRSF)-interacting serine-threonine kinase 1 protein_id : NP_033094.3

name	Bphl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21624609 GeneID:68021 MGI:1915271
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006725 - aromatic compound metabolism [Evidence IEA] codon_start : 1 note : biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) product : biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) protein_id : NP_080788.1

name	Tubb2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859488 CCDS:CCDS26444.1 GeneID:22151 MGI:107861
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA]; GO:0051258 - protein polymerization [Evidence IEA] codon_start : 1 product : tubulin, beta 2 protein_id : NP_033476.1

name	LOC100042686 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263963 GeneID:100042686
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478686.1

name	Tubb2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21746161 CCDS:CCDS26445.1 GeneID:73710 MGI:1920960
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0051258 - protein polymerization [Evidence IEA] codon_start : 1 product : tubulin, beta protein_id : NP_076205.1

name	2310047M15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82950129 GeneID:69666 MGI:1916916
definition	codon_start : 1 product : hypothetical protein LOC69666 isoform 1 protein_id : XP_889756.1

name	3110004L20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701678 CCDS:CCDS26446.1 GeneID:73102 MGI:1920352
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC73102 protein_id : NP_001028339.1

name	EG666666 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263938 GeneID:666666 MGI:3643830
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990369.2

name	1300014I06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115292445 GeneID:66895 MGI:1914145
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66895 protein_id : NP_080107.3

name	EG432746 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94394779 GeneID:432746 MGI:3644013
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484242.3

name	Prpf4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956074 CCDS:CCDS26448.1 GeneID:19134 MGI:109584
definition	GO_component : GO:0005694 - chromosome [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : pre-mRNA protein kinase product : PRP4 pre-mRNA processing factor 4 homolog B protein_id : NP_038858.1

name	4933417A18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118403292 GeneID:66761 MGI:1914011
definition	codon_start : 1 product : hypothetical protein LOC66761 protein_id : NP_080026.2

name	1810022C23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312210 CCDS:CCDS26449.1 GeneID:69123 MGI:1916373
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC69123 protein_id : NP_081223.1

name	Peci (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755026 CCDS:CCDS26450.1 GeneID:23986 MGI:1346064
definition	GO_component : GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0007031 - peroxisome organization and biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation function : catalyzes the isomerization of peroxisomal 3-cis- and 2-trans-enoyl-CoAs product : peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase protein_id : NP_035998.1

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 1 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 2 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 3 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 4 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 5 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 6 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 7 pseudo : _no_value

name	LOC193403 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:193403
definition	number : 8 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 1 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 2 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 3 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 4 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 5 pseudo : _no_value

name	Vmn2r-ps94 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619864
definition	number : 6 pseudo : _no_value

name	4930482L21Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435351
definition	number : 2

name	4930482L21Rik (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435351
definition	number : 1

name	D0H6S2654E (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:108161
definition	number : 1 pseudo : _no_value

name	D0H6S2654E (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:108161
definition	number : 2 pseudo : _no_value

name	LOC666697 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666697
definition	number : 1 pseudo : _no_value

name	LOC666697 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666697
definition	number : 2 pseudo : _no_value

name	LOC620132 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263965 GeneID:620132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 448 ESTs, 13 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_033823.1

name	LOC666677 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263940 GeneID:666677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 6 Proteins product : similar to ribosomal protein S4, X-linked pseudo : _no_value transcript_id : XR_032738.1

clone name	MSMg01-525C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100P08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-418A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339I16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-180D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151O06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-262L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504E12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-126O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075H03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-266L24.T7 (MSMg01no266_l24.b1)	MSMg01-266L24.TJ (MSMg01no266_l24.g1)
ACC	AG407653	AG407654
length	732	1,386
length of high quality (start - end)	318 (45 - 362)	---
definition	CHROMAT_FILE: MSMg01no266_l24.b1 PHD_FILE: MSMg01no266_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:37 2005	CHROMAT_FILE: MSMg01no266_l24.g1 PHD_FILE: MSMg01no266_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:37 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCCACGCAGTCTTTCATATACTCCTGCTATTTATTCCTATGGATGGAA TTGAAATATCTGGTTCCCAAAGCTCTTACCTGTGAGCAAAGTTCCACCTT GGATACCAGTCGGTAACTGTAAACCTGGCTGGGCTGTGGAGCAGGTGACC CGGAGAGCTCCTGTTGGCTCTCCACTTTCACATTCTATTATGTAGCTCCC AGCACTGAATCAGCCAAATAAGCTTGACTTATAACCCGAAACCACTCCAT GTCCTGTGTATCTGTTACTGACATTTATGTAACACAGGCCCTCAAAGGTG TTTGCAACCCTCTCTTTCTTTGCCCCACCCCCTCAATTCTTGCTTTAAAG TCCCAACTTAATTTGAGATGCTGTTCAAAAAGAATCCAGATTTTGACTCT TTTTTTTGGACTTCAGATTAGGCGTGGTCAGCCTGGTACTGTTCAGGTGC ATATCAGAAAACACCTTTGGTCCCAAGCATTGCCTAGTGCCAATAACTAC AGCTCCTATGATTGAGGGGAACAACAACCGTGTCATGTCCAGAAGTCAGC ATACCATGGCTCCTCCCCACCCACCGACGTACACTCTTTCTGCTCCCTGC TCTATGATGTTCTCTGAGCCTTAGATGGGGNGGGGGAGATTAATATCAAT GACTCATCAACAGCTGAACACTCACAGCTACT	CTACCGTGCGTAATAATATTAACACCGTACTTTATAATCGCGCAGTCGTA GCGCGTTTTCTCTCGCGCGTCTCCGTCATTGCGACATGTAGTTGTGTAGA TAGGTCCGGTGCTGTCCTGTCTTCCACGTTATTTCCTCCACGCCACGGCG ATTATTTATCCTATATAATTGTCCTGTCCCTCGACAGGCCATTACTGTGC GCTCACCTAAATAGAATGCAACAGTAGGCGATAGAATCGGTGCTCGACAT CACTATATAAGTAAATATTAGATTAGGCGAAGACGATCTCACCGCGCCCG CATAGTTCTATATGCGCAGTAGTGTAGCCGCATATCGCGACCGGATATAC GCGCTCACGCGTCATATAATTATGAGCGCGTGGGACCACATAATGATTCT ATTATCGCCGAATGTGCGCGGGGGTGAACCAGACGGACGCGTGNGGGGTT AGCATCAGCGTCATGACGGGGCTGAACTGCATGCGCCGCTTACTCGATAA CTCCGTGGATTGTGCGCGGCGCGCCCGGTGATTTTATTGATTTCACTCCT CCGCGAACGGATTGTCCGGCCCTCTTACCTCCCCGCAAGAGTTGACTGCA TGTAGGGGAAGTTGTGCCGTATTTACATTTTACATCGTCGCCTCGTATTA TAATNATGTTTTGGTGCAGATGGCGACGCGCTTGAATCGGGCGTCGGGAC GTCATACACCGATTACATGTATGTTGTATTTGTCCGCTTGTTACGCTTGT GCGCCACATGCTATTGTTGCGCTACCCGCCGCATCGAATCGTGTTCCGAT ACAATGCGCTCTACGCGCTCTTTAGACCGTGGCCGACTATACGACTACAT GCACAATCCTGTGTAGCACCAGATTAGAAGACACTCTCGCGTGGTCTTTC CACTCATTCCTCACACACACACGTGTCATTAGCATCGTCTCATGACCTTC GCCGCTATGCTACCTGCTATATATTCAACGCGCGCGCGCTCATCCGTCCA CACCCGCCGCGCGAAATAAGAGGCGCAGGATAGTTTAATGTANTAATACA TTCTACCGACGCGCTCGCTATTCTCCCGCACCGCGCACCTCTCCTTCTTN CGTGATCTCGTCCCTGCTCACTATCTACCAGAACGTACGTATAACGACGC GTGCGTGCCGGGCTGAGTCAGCATACTGTCAATATCGCTATATACGANTG ATCGACATATCGTCGTCGCCACTCATGCATCTATTACGATCTCAACGACG TCATATTGATGTAGTCGCATCGGAGTCTATCTCTACATAACGTATCTANG CGTGTGTGGTGTGGTACTAACCGTCACCGAGNGAGCTCGCCGCGACAGAG CGTGGTACGGTGCATTCTCTCTCTCTCTATCTGTCN
quality values	Open. Hide. 6 8 8 6 6 9 14 37 59 43 37 37 37 32 21 19 9 9 9 17 19 41 43 59 35 32 36 36 36 36 47 53 50 43 43 43 43 43 43 37 37 30 30 36 36 41 42 47 42 47 47 47 48 48 47 41 41 42 48 68 68 57 59 59 48 48 47 48 48 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 27 27 12 15 18 30 30 43 44 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 57 57 57 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 48 48 43 43 43 46 46 48 46 47 47 57 57 68 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 41 32 20 15 9 9 8 8 8 7 6 6 6 8 11 10 9 14 14 10 8 8 8 8 10 9 10 10 11 11 18 28 41 59 59 59 59 59 59 59 48 48 48 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 43 43 37 39 39 37 37 32 28 25 34 34 41 27 19 8 8 8 8 8 16 19 22 30 31 59 59 59 59 59 59 59 48 48 48 48 57 57 57 59 59 59 59 59 59 59 68 68 68 68 68 57 57 48 43 43 47 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 59 59 59 57 57 59 59 59 68 57 57 57 57 48 57 59 59 59 68 68 68 59 59 59 59 57 59 57 68 57 57 57 57 59 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 59 68 59 59 57 57 57 59 59 59 57 57 54 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 57 43 43 43 59 47 43 43 48 48 57 57 59 59 57 48 48 48 48 48 48 48 48 59 48 48 48 59 59 47 41 39 39 39 39 41 44 59 59 43 59 59 59 47 41 41 41 41 41 43 37 41 44 44 44 47 59 59 59 59 50 53 53 57 57 57 57 57 57 57 57 50 53 53 53 50 48 59 59 47 50 42 41 39 39 35 31 31 39 43 59 59 59 35 31 26 34 32 34 22 22 16 24 21 16 17 3 0 3 27 27 43 41 37 37 37 37 30 26 30 41 37 32 24 18 18 23 31 28 22 28 18 19 16 13 10 10 15 19 10 10 13 21 11 15 19 21 24 30 24 28 28 37 36 41 37 37 37 31	Open. Hide. 8 10 8 8 8 8 8 8 10 10 10 8 8 6 6 6 6 8 8 7 6 8 8 8 8 8 8 8 8 8 8 11 10 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 11 11 10 9 10 10 10 9 9 9 10 8 8 8 8 8 9 7 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 6 6 6 8 6 8 8 6 8 7 7 6 6 6 6 8 8 8 6 6 6 6 10 7 8 8 8 8 8 8 8 8 11 10 10 8 8 8 8 8 8 8 8 8 10 10 8 8 7 13 12 9 9 9 9 8 10 6 6 8 6 8 8 10 8 8 6 6 8 6 6 6 8 6 6 6 6 9 12 14 14 8 6 8 6 6 8 6 8 6 6 6 7 8 8 8 8 8 8 7 9 9 8 7 8 8 6 6 10 10 8 8 8 8 8 8 8 8 8 6 6 6 6 10 8 11 12 6 6 6 6 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 6 6 6 6 10 8 13 8 8 13 13 8 8 10 8 8 8 8 10 8 8 8 8 8 8 8 8 7 7 6 6 8 8 8 8 8 12 8 8 8 10 8 9 9 8 8 8 8 8 9 8 12 8 8 8 6 6 8 8 8 8 8 8 10 8 8 8 8 8 10 10 10 6 6 6 6 6 8 8 10 10 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 12 12 9 8 8 8 8 8 8 12 8 8 6 6 6 6 8 6 8 8 8 8 6 6 6 6 6 8 8 10 10 10 8 6 6 6 8 6 6 6 8 8 8 6 8 8 10 12 12 10 8 8 10 10 6 6 6 7 10 10 8 8 8 8 6 8 6 6 8 8 6 6 10 15 15 11 11 11 12 11 8 8 6 6 6 8 6 6 8 8 6 6 6 6 8 10 10 8 8 3 0 3 9 10 10 10 10 10 10 12 10 8 8 8 8 12 10 10 10 11 8 8 6 6 6 6 6 6 6 6 10 10 10 10 10 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 9 10 11 11 8 8 6 6 6 6 6 6 6 8 8 8 6 6 8 8 8 8 10 8 8 9 8 8 8 8 8 8 8 8 6 6 6 8 8 11 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 9 8 8 8 8 8 9 10 10 8 11 8 8 8 8 8 6 6 6 6 8 8 8 10 11 11 11 11 12 16 18 11 10 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 6 6 8 8 6 6 7 6 8 8 8 8 8 8 8 8 11 13 11 11 12 8 8 8 8 8 8 8 8 10 10 8 8 10 8 9 8 8 8 9 10 10 10 10 10 8 8 8 8 10 8 8 3 0 3 6 6 6 8 8 6 6 6 7 10 6 8 6 8 7 8 8 8 8 8 8 8 10 10 8 8 8 6 6 6 8 10 10 10 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 11 8 9 8 8 10 9 8 8 6 6 6 6 9 9 9 10 10 11 11 11 15 10 10 10 12 13 13 11 8 8 8 8 12 11 10 10 8 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 10 10 6 6 8 6 8 8 8 10 6 6 6 12 6 7 7 6 8 8 8 8 6 6 6 6 8 8 8 6 6 7 10 8 10 10 10 8 10 6 6 8 8 8 8 8 8 10 10 8 8 8 8 10 10 10 10 10 8 8 8 6 6 6 6 8 6 6 8 8 13 15 10 13 10 10 10 8 8 6 6 8 8 7 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 8 8 10 10 11 11 12 11 11 8 8 6 6 6 6 6 6 6 7 11 10 8 8 8 6 6 6 6 6 6 8 8 8 8 9 8 8 6 6 6 6 8 10 13 12 8 8 8 8 8 8 8 10 10 8 8 8 10 10 8 8 8 8 8 6 6 6 6 8 8 10 13 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 12 9 9 8 8 8 8 8 8 8 6 6 8 8 11 11 12 12 12 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 10 11 9 10 9 10 10 10 10 10 12 8 8 8 8 11 8 8 6 8 8 8 8 6 8 6 6 6 6 6 8 6 6 6 6 8 8 8 8 6 10 6 9 8 8 11 8 9 8 8 8 6 6 6 6 8 6 3 0 3 8 8 8 8 8 8 8 8 12 7 7 8 7 8 6 6 6 6 6 6 10 8 10 8 8 8 10 8 8 8 8 8 8 10 8 10 11 18 10 8 6 6 8 6 6 8 21 10 10 8 8 8 8 9 3 0 3 8 8 8 9 9 13 10 10 8 8 10 8 6 7 8 8 10 10 8 11 8 6 8 8 9 10 10 11 8 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 10 10 8 6 8 6 6 6 6 8 8 10 8 8 8 8 8 9 12 11 11 10 8 6 6 6 6 8 8 8 8 8 9 9 9 12 16 12 8 8 3 0 3 8 8 8 9 8 8 8 8 8 6 6 6 6 8 8 8 11 8 11 11 8 8 8 10 10 10 11 8 8 8 11 8 8 6 6 8 8 8 8 8 8 8 8 6 6 6 6 6 6 10 13 9 9 8 8 6 6 6 6 6 6 6 6 8 8 7 7 8 6 6 8 8 8 6 6 6 6 7 7 8 8 8 8 13 8 10 6 6 6 6 6 6 10 10 10 8 8 8 3 0 3 10 9 10 10 11 13 8 8 8 8 8 8 10 13 8 8 6 7 8 8 6 6 6 8 6 6 7 8 11 8 3 0 3 11 11 9 10 8 8 8 8 8 8 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 15 10 8 8 6 6 6 6 6 6 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no266_l24.b1 MSMg01no266_l24.b1 CHROMAT_FILE:
MSMg01no266_l24.b1 PHD_FILE: MSMg01no266_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:37 2005
         (318 letters)



>mm_chr13_34747187_34747903
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgcagtctttcatatactcctgctatttattcctatggatggaattgaaata 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 516 gaattccacgcagtcttttgtatactcctgctatttattcctatggatggaattgaagta 457

                                                                       
Query: 65  tctggttcccaaagctcttacctgtgagcaaagttccaccttggataccagtcggtaact 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 456 tctggttcccaaagctcttacctgtgagcaaagttccaccttggatacaagtcggtaact 397

                                                                       
Query: 125 gtaaacctggctgggctgtggagcaggtgacccggagagctcctgttggctctccacttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtaaacctggctgggctgtggagcaggtgacccggagagctcctgttggctctccacttt 337

                                                                       
Query: 185 cacattctattatgtagctcccagcactgaatcagccaaataagcttgacttataacccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cacattctattatgtagctcccagcactgaatcagccaaataagcttgacttataacccg 277

                                                                       
Query: 245 aaaccactccatgtcctgtgtatctgttactgacatttatgtaacacaggccctcaaagg 304
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaccac-ccatgtcttgtgtatctgttactgacatttatgtaacacaggccctcaaagg 218

                        
Query: 305 tgtttgcaaccct 317
           |||||||||||||
Sbjct: 217 tgtttgcaaccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information