BAC Information

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BAC

Clone NameMSMg01-267B18
Chromosome13 (Build37)
Map Location 32,062,747 - 32,063,060
singlet/doubletsinglet
Overlap geneGmds
Upstream geneExoc2, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267B18.T7 (MSMg01no267_b18.b1)MSMg01-267B18.TJ (MSMg01no267_b18.g1)
ACCAG407920AG407921
length755740
length of high quality
(start - end)		318 (45 - 362)656 (77 - 732)
definitionCHROMAT_FILE: MSMg01no267_b18.b1 PHD_FILE: MSMg01no267_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:05 2005CHROMAT_FILE: MSMg01no267_b18.g1 PHD_FILE: MSMg01no267_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCCCTAGAAATAGAGGTAAACACGGCTAACAGATGGAAGAGCTG
AATGGAAATTTCAATAAAGAGGACCACAAAGAAGCATTTGTAAGCACAGA
GGTGCATGCATTAAAAAAAGAAGCTGAAAAATGGAACTTTGTTTTATTTT
GATAGAGTGCCAAAACAGCGCTGCATTCCTTAAAGAGTGGGATAAAGGAT
CGAGTTAGACTGGCCTTCTCAACACCTCCTGAAAAGCCCCCTTGGGTCTC
ATTTTGCTGGGATGACTATTTATATGACAGGTAAGGGAATAATTTTGCGG
GATTCTGTTACATCNAGTGNCTCTGCCGACCCTGCCCCAAAAGAGCAAAT
GCAAAAGTGACAATGTGGGTAATTGCCTGATAAAGATAATGGAATACTGA
TTGAAGTCAATGATTATAACACCTGAAAGATAAATGAGCTGATGTGAAAG
GTTCAGGGGGAGATGGCTGTGGAGTGAACCAGCAGGCAGCACACACAGGG
TGGCTGAGCAACTGTGGAATGCAAGAGGGGGCAGGCTTCCTGACCTAGAG
CTCACTCCAGCCTGGAGTAGGCCAAGATCTAAAGCAGGTTAGTTTGTAAA
ACATGCAGTAAAACAGAAATTCAGCCCAATGCCCCAAACTGCAGGATTAG
AGTAACATTAGTTAATGTGGCCCTCCATTAATTTTCACTATAACCTCTGA
AGGCC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_b18.b1 MSMg01no267_b18.b1 CHROMAT_FILE:
MSMg01no267_b18.b1 PHD_FILE: MSMg01no267_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:05 2005
         (318 letters)



>mm_chr13_32062543_32063260
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccctagaaatagaggtaaacacggctaacagatggaagagctgaatggaaa 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccctagaaatagaggtaaacatggctaacagatggaagagctgaatggaaa 264

                                                                       
Query: 65  tttcaataaagaggaccacaaagaagcatttgtaagcacagaggtgcatgcattaaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcaataaagaggaccacaaagaagcatttgtaagcacagaggtgcatgcattaaaaaa 324

                                                                       
Query: 125 agaagctgaaaaatggaactttgttttattttgatagagtgccaaaacagcgctgcattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaagctgaaaaatggaactttgttttattttgatagagtgccaaaacagcgctgcattc 384

                                                                       
Query: 185 cttaaagagtgggataaaggatcgagttagactggccttctcaacacctcctgaaaagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaaagagtgggataaaggatcgagttagactggccttctcaacacctcctgaaaagcc 444

                                                                       
Query: 245 cccttgggtctcattttgctgggatgactatttatatgacaggtaagggaataattttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccttgggtctcattttgctgggatgactatttatatgacaggtaagggaataattttgc 504

                         
Query: 305 gggattctgttaca 318
            |||||||||||||
Sbjct: 505 aggattctgttaca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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