BAC Information

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BAC

Clone NameMSMg01-267E10
Chromosome13 (Build37)
Map Location 91,541,727 - 91,542,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
Downstream geneSsbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267E10.T7 (MSMg01no267_e10.b1)MSMg01-267E10.TJ (MSMg01no267_e10.g1)
ACCAG408042AG408043
length728713
length of high quality
(start - end)
315 (45 - 359)313 (384 - 696)
definitionCHROMAT_FILE: MSMg01no267_e10.b1 PHD_FILE: MSMg01no267_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:18 2005CHROMAT_FILE: MSMg01no267_e10.g1 PHD_FILE: MSMg01no267_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTAATTTT
CTGGAGTCCACCCTCTTCAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGTTTTTATCTTCGAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTCTTTGCNTNTCGNTTCCTGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTACTACAAAGAGATAGATATTGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTTGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGGT
CATAGGTTTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTTGAGAAGAGTTTTTGCTATCCTATG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAATGCTGAAACTCCATGA
TCAAAAGCAACTTCTCTGACCTTCCCACTGAAAATTCTCATGTGCCCCAG
GGTTTAATATGGACAGGGATAGGGATGAAATTGTCTCTGTGTCTAGAGTA
TAATTAGCATTGAGAGCAAGGCCATATTGTTCTAGCATTGACCCGTCCTT
GACTGTCCTATAAACTGTTTAAACAATCCCTTTATAGCTTCCTACTGGGG
CTCCACATGGGTTACATCTATTCTTGAATGTTGTAAACGAGACATACATC
ATTTCGTATTAAATAGTGCTGCCCCTCCCCCTCTAAGCTCAAAAGTTTAA
TCTTCAGTCCCTAGCGTCTGAACTCATAAATGATTAATTCACATCAAATT
TTCACTCTTTCAACAGTTTTCTCCTTTTCATTCCAAATCCGTATCTCAAG
GACAATATACAGACATTAATTTTTGAGGTAGAATGGGAGAAATTATGCTA
AATTCCTTCTGAGAATTAATGTGGAGCTAAATGTAATATTTCCCAGTTCC
ATGATGCCTTTGCTTGGGTGTGTTCATAATAGTTTTATTTTAATCTCTAC
TTTTTGAGGAAGTATTTTGATTTGGAATTTTTGAAAGATTTCATAATAAT
GTTTAATAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_e10.g1 MSMg01no267_e10.g1 CHROMAT_FILE:
MSMg01no267_e10.g1 PHD_FILE: MSMg01no267_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:18 2005
         (313 letters)



>mm_chr13_91541527_91542239
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagctcaaaagtttaatcttcagtccctagcgtctgaactcataaatgattaattcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 taagctcaaaagtttaatcttcagtccctagcgtctgaactcatagttgattaattcaca 260

                                                                       
Query: 61  tcaaattttcactctttcaacagttttctccttttcattccaaatccgtatctcaaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaattttcactctttcaacagttttctccttttcattccaaatccgtatctcaaggac 320

                                                                       
Query: 121 aatatacagacattaatttttgaggtagaatgggagaaattatgctaaattccttctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatacagacattaatttttgaggtagaatgggagaaattatgctaaattccttctgag 380

                                                                       
Query: 181 aattaatgtggagctaaatgtaatatttcccagttccatgatgcctttgcttgggtgtgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aattaatgtggagctaaatgtaatatttcccagttccatgatgcctttgcttgggtttgt 440

                                                                       
Query: 241 tcataatagttttattttaatctctactttttgaggaagtattttgatttggaatttttg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataatatttttattttaatctctactttttgaggaagtattttgatttggaatttttg 500

                        
Query: 301 aaagatttcataa 313
           |||||||||||||
Sbjct: 501 aaagatttcataa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)