BAC Information

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BAC

Clone NameMSMg01-267L04
Chromosome13 (Build37)
Map Location 7,572,799 - 7,573,450
singlet/doubletsinglet
Overlap genenone
Upstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267L04.T7 (MSMg01no267_l04.b1)MSMg01-267L04.TJ (MSMg01no267_l04.g1)
ACCAG408344AG408345
length733726
length of high quality
(start - end)
324 (45 - 368)652 (75 - 726)
definitionCHROMAT_FILE: MSMg01no267_l04.b1 PHD_FILE: MSMg01no267_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:49 2005CHROMAT_FILE: MSMg01no267_l04.g1 PHD_FILE: MSMg01no267_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGAAGGTTGTTGTGTCCTCCATTCCCTTCATTCAGGGCCAGTG
TCCCAAGGCCTCCCACTCTCTGCATAATGTGTGGCAGTGAATCTCTGTAT
TGGTTCCCTTCTTCTGCAGGAGGAAGCTTCTCACTTGCTGGCTGAGCAAG
GCACTGATATGAGTATAACAGAATGTCATTAAGATTCATTTTATTGCTAC
ATTTTATTATCCAACAGTGCTATTGAGTTTTACCCTAAGTCCTTGGGCTA
CCTAGTTGCAGATTCTTGGTCACTCAAGCAGTAACAAGTATGGGTTCCAT
CTCATGGAATAGGTGCTAAGTTAAATCACACATTGGTTGGCTACTTCCAC
TAACACTGTGCCACCATTGCCCTAGTATATCCTGCAAGCAGAAGAGCAGT
GTGTATTAATGGATTTGTGGGTGGGCTGATGTTTACATTTCTCTTTCAGT
GTGGCTAGTCCTCACGATCTCTTGTCTTTAAAATGGATAAGCTGTATTGT
TTTAGAAGAGTTGCTTCATCTTTTTGTACCACACTGGTAAAACGTGATAA
TTTTTATTTTTCTATTTTTTTATTTTTTGGTGTTTCGAGACAGGGTTTCT
CTGTGTTGCCCTGGATGTCCTGGAGCTCACTTTGTAGAACAGGCTGGCCT
CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTGGGGCGTGAGTCTTTCCTCCCT
CTCTTCCCCTGAACCCCCTTTTTAGTTCCCACATGCCTGTTGCAGAAATC
TTTGGTTTTACTAAAAGCAACACATAGATTTTCTTTTATGACTTGTGCTT
CTGATTAGTAGTGGAGCCTTGTGAATTCCTCGTTGATTGTCTTCCAGTTT
GTTTTTAGAAGCCTGTGTTTATGTCTCCCGATGGAAACTTAAGCATTCCT
TTGTATTTATCTATAAAATATAAGTGTAAGATTTGAATCCATTGGTCAAT
TTTGGAAGCCATGCTCCATGATCACATGTGATCATGATCTGATCATGATT
TCACATACTGAATCACAGTCTAATTAGAGTTCCAAGTCCAGACTTGCAAA
TGAAGCTGCATTTTATGGTGGTCCCTGATTCTTGACACCAGTACATTACT
AAGCAGACAGGAGGACTTTAAGATCTTCCAAGGACAGGTGGGAGGTATTT
TGCTCAGGAATCCTTATGACCTCCTGCTTTGTATGGATCCTCTTTTGCTA
GAATCTACAGCAGGACCGTTAAGCCTTAGCATCTTCCTTTCCTATTTTTA
CTTCTGCCCTGATGGAGACTGAGTGGGGTGAGAGGGAGCATCACTCCTAA
CTGATAACAGACATCATGGAGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_l04.g1 MSMg01no267_l04.g1 CHROMAT_FILE:
MSMg01no267_l04.g1 PHD_FILE: MSMg01no267_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:49 2005
         (652 letters)



>mm_chr13_7572542_7573593
          Length = 1052

 Score = 1207 bits (624), Expect = 0.0
 Identities = 645/652 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtggggcgtgagtctttcctccctctcttcccctgaaccccctttttagttcccacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tggtggggcgtgagtctttcctccctctcttcccctgaaccccctttttagttcccacat 850

                                                                       
Query: 61  gcctgttgcagaaatctttggttttactaaaagcaacacatagattttcttttatgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gcctgttgcagaaatctttggttttactaaaagcaacacatagattttcttttatgactt 790

                                                                       
Query: 121 gtgcttctgattagtagtggagccttgtgaattcctcgttgattgtcttccagtttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtgcttctgattagtagtggagccttgtgaattcctcgttgattgtcttccagtttgttt 730

                                                                       
Query: 181 ttagaagcctgtgtttatgtctcccgatggaaacttaagcattcctttgtatttatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttagaagcctgtgtttatgtctcccgatggaaacttaagcattcctttgtatttatctat 670

                                                                       
Query: 241 aaaatataagtgtaagatttgaatccattggtcaattttggaagccatgctccatgatca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 669 aaaatataagtgtaagatttgaatccactggtcaattttggaagccatgctccatgatca 610

                                                                       
Query: 301 catgtgatcatgatctgatcatgatttcacatactgaatcacagtctaattagagttcca 360
           ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 609 catatgatcatgatctgatcatgatttcacgtactgaatcacagtctaactagagttcca 550

                                                                       
Query: 361 agtccagacttgcaaatgaagctgcattttatggtggtccctgattcttgacaccagtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agtccagacttgcaaatgaagctgcattttatggtggtccctgattcttgacaccagtac 490

                                                                       
Query: 421 attactaagcagacaggaggactttaagatcttccaaggacaggtgggaggtattttgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 attactaagcagacaggaggactttaagatcttccaaggacaggtgggaggtattttgct 430

                                                                       
Query: 481 caggaatccttatgacctcctgctttgtatggatcctcttttgctagaatctacagcagg 540
           |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 429 caggaatcctaatgaccccctgctttgtatggatccccttttgctagaatctacagcagg 370

                                                                       
Query: 541 accgttaagccttagcatcttcctttcctatttttacttctgccctgatggagactgagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accgttaagccttagcatcttcctttcctatttttacttctgccctgatggagactgagt 310

                                                               
Query: 601 ggggtgagagggagcatcactcctaactgataacagacatcatggagtgctg 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggggtgagagggagcatcactcctaactgataacagacatcatggagtgctg 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)