BAC Information

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BAC

Clone NameMSMg01-268K06
Chromosome13 (Build37)
Map Location 76,564,768 - 76,565,052
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268K06.T7 (MSMg01no268_k06.b1)MSMg01-268K06.TJ (MSMg01no268_k06.g1)
ACCAG408997AG408998
length726726
length of high quality
(start - end)
317 (45 - 361)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no268_k06.b1 PHD_FILE: MSMg01no268_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:57 2005CHROMAT_FILE: MSMg01no268_k06.g1 PHD_FILE: MSMg01no268_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTGACACCTATTCTCTGCATTTAGACTAGTTGTAAGTCTCTGTA
TTGACTGTGATTCACTGTACAAATTTGATTATCTGTTGTGAATCTAGAGA
TGTGCTATTTATGGGCATAGAGCCACATGTTTAGAAAGAAGTTTGATAGC
ATTTCTTTAGTAAAATAATAAGTTCACTCTTAGGCCTATGGGTTCCTCAC
CCTCATATTCTTAGCCAGATTTACAGATCAAAAATTGAGTTTCCTCCTGT
CCAGTGGGCTTTAAATCTAATCAGAAAATTGATGGACACCATTTTACCCT
TGGGCATATAAGGTTTTTATCAGCCCCCACCGCAGTTTGCAATGTTCACA
ACTGGATAAAGCTGCTGCTGATTTTTCTCCCCCAATAGCTAGCATAGCAC
CTTTTGATAATATGAAAGTTAGCCAACAAAAAGGAAACTTCTTGACTTCT
TTATATTTTGCGAATCAATGTGTGATGTATTCAGCAACAAGGTCTTACTA
TTAAGTTCTGATGGGCAACCAAGAACAGCAGCAATACCCTGCATTGTTTA
GAGTTTTGAAGTGTTCTCCTTTGGAATAAGCACTGTACACGATAAATTAA
GAATTATGAGCTACTTTTTACTATACTATTTATTCTTTAAGAGTGTTACA
CATTACTGGTTTCAGGACCTCTGAAN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGATTCTGCTCTTCTGGGGGCGCAG
CCTCCAGAAAGCCTAGGAGGTTGTGCCAATAGAGGCAGAGCTTTAGGGGG
TGAAGAAAGAAGCCTGCTACTTGTCATTATGAGGTTATCATAGGCCTGTA
GCCACACTGCAAATGTGAGGCTCCCAGAGACTATCTGCTGACTGAACCAA
GGCCACAAAGGCTGCCTTTCAACTAGAAGAGAGAATTCTGATGCAAATCA
AAATACAGAAATCTTGTTTTAAGTCTGTGTTTGATTGCTTCAAGCTCGAT
GCCAGCTGCTTTCGTATTTTCTCCACCTCCCCTCCCATCCATCTTTCTAT
GTTCATGTTTTCCCATTACAAAAACTCCATTCCTGTTTGCCTACACATAT
CCTAATCCTCATGGTTTTCTACTTTTATTTTGACAGATAATAAACAGATG
GGAGGACCTAGATAAAATCATAAATGTGGCATCCCACATGTCAACCGGGC
TAATTTAATTCTGAGGAGTCAGTACTATGGAAAATATAGTTTGATTTTGA
TGATAACTTGGCAACCTACCTACTAAACAGCATACCTATGCAGAAAAGGG
TCACTTTACTTACATTCAAGCTTGTTTTGACAAAGAGTTTGTGACCTGCG
ACCAATGCTGACTAATGCACAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_k06.g1 MSMg01no268_k06.g1 CHROMAT_FILE:
MSMg01no268_k06.g1 PHD_FILE: MSMg01no268_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:57 2005
         (288 letters)



>mm_chr13_76564568_76565255
          Length = 688

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggattctgctcttctgggggcgcagcctccagaaagcctaggaggttgtgccaatagag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 485 aggattctgctcttctgggggcgcagccttcagaaagcctaggaggttgtgccaatagag 426

                                                                       
Query: 61  gcagagctttagggggtgaagaaagaagcctgctacttgtcattatgaggttatcatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcagagctttagggggtgaagaaagaagcctgctacttgtcattatgaggttatcatagg 366

                                                                       
Query: 121 cctgtagccacactgcaaatgtgaggctcccagagactatctgctgactgaaccaaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cctgtagccacactgcaaatgtgaggctcccagagactatctgctgactgaaccaaggcc 306

                                                                       
Query: 181 acaaaggctgcctttcaactagaagagagaattctgatgcaaatcaaaatacagaaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acaaaggctgcctttcaactagaagagagaattctgatgcaaatcaaaatacagaaatct 246

                                                        
Query: 241 tgttttaagtctgtgtttgattgcttcaagctcgatgccagctgc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgttttaagtctgtgtttgattgcttcaagctcgatgccagctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)