BAC Information

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BAC

Clone NameMSMg01-268K21
Chromosome13 (Build37)
Map Location 67,575,780 - 67,576,013
singlet/doubletsinglet
Overlap gene9630025I21Rik
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098
Downstream geneZfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268K21.T7 (MSMg01no268_k21.b1)MSMg01-268K21.TJ (MSMg01no268_k21.g1)
ACCAG409021AG409022
length730745
length of high quality
(start - end)
322 (46 - 367)234 (460 - 693)
definitionCHROMAT_FILE: MSMg01no268_k21.b1 PHD_FILE: MSMg01no268_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:00 2005CHROMAT_FILE: MSMg01no268_k21.g1 PHD_FILE: MSMg01no268_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTCTGTACCCATTTTTTAACTGGGTTATTTGGTTTG
CTGGTGTCCAACTTCTTGAGTTTTTTTTTTTTTTATGTAATTGATGTCAG
CCCACTGTGGGATTTAGGGTTGCTGAAAATCTTTTCCATTCTGGTGGCTG
CCATTATGACAGTGTCCTTTGCTTTACAGAAGGTTTCTAGTTACATGAGA
TCCCACTCATTGTTTATTTTAGTGCCTTAGTTACTGGTGTTCTGTTCAGA
ACGTTGTTCCTATACCAATGCATTCAAGGCTATTCCCCACTTTCTCTTCT
CTTAGATTTAGAGATTTATATTATTTGCCCGGCCTCGCTCTTTTACAGAT
ATATTTTTTATTTATATGAGCGCACCACCCCCAAAAAAAAATACAAACTA
GAAAAGCGCATCTCATCCCATTACAGATGATTTGTGAGCCAACATGTTGT
TACCGTAAAGTCAACTCAGGACGTCTATCATATAATCCCACCACTTATCT
GCTGATTCATATCTTCTGCTCGTGTTACGACTTCACGTTTATCCACGCTT
CATTCCTAAGCTCTGAAATCCGACACAATATATTTATACTCCCATTTCCC
CCTGCAAACTCCCCATACCCTCCTCTTATTTCACCTTCCTCTTACCGAAC
CCCTTTATTCTTTTATCTTCTATTTTTATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGATGTTGCTTCAGCATTGCAGGA
TAGTAAAATGAATTTCCACTTTTTTCCCACTTGTAGGGTTTCTCTCCAGT
ATGAACTGCCTGGTGTTTCCTAAGATATGAGTGATGAAGAAAGGCTTTGT
CACACTCTTCACATTTGTATGGTTTCTCTCCAGTATGAATTTTTTGATGA
TGCTGAAGATGTGAGGAACGCAAAAACCGTTTGCCACATTTTTCACACTT
GTAGGTTTTCTCATCAGTATGATATTTCTGGTGTATTAAAAGTGATGAGC
GACTGCTAAGTGTTTTANGTCANNCTTCANANCCGNAGGCCTTTGTCTCT
ATTATAANGTCTCTGGAGTACNGAAAGTGTTAAATGGGAACTNAAGGCCT
TACCGCAGTCTTCAAAGTAGTAGGGTTCCTCTCCTGTATGAATTCTCTGG
CATTGCATACTTAGAGAGCTGTGATCAATGGCCTCATTGTGATTGTTAAA
TTCATTGCCTGTTGTTCCTGTTGAGCAAGAGTTCACATATGAACAAAATG
TGAGAAGTATTCATCATACTTAGGATGCTTATCTTTAAAATAGTGACCTT
TACTCACATATATTTAACCATAAATGAAAATCTAATTTGGTGTAGGCACT
AAATATAAGTCAAAAATATAGTATATAGTAGCTGATCTGATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_k21.g1 MSMg01no268_k21.g1 CHROMAT_FILE:
MSMg01no268_k21.g1 PHD_FILE: MSMg01no268_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:00 2005
         (234 letters)



>mm_chr13_67575580_67576213
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcaaagtagtagggttcctctcctgtatgaattctctggcattgcatacttagagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaaagtagtagggttcctctcctgtatgaattctctggcattgcatacttagagagc 260

                                                                       
Query: 61  tgtgatcaatggcctcattgtgattgttaaattcattgcctgttgttcctgttgagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgatcaatggcctcattgtgattgttaaattcattgcctgttgttcctgttgagcaag 320

                                                                       
Query: 121 agttcacatatgaacaaaatgtgagaagtattcatcatacttaggatgcttatctttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcacatatgaacaaaatgtgagaagtattcatcatacttaggatgcttatctttaaa 380

                                                                 
Query: 181 atagtgacctttactcacatatatttaaccataaatgaaaatctaatttggtgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtgacctttactcacatatatttaaccataaatgaaaatctaatttggtgt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)