BAC Information

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BAC

Clone NameMSMg01-269P19
Chromosome13 (Build37)
Map Location 18,112,899 - 18,113,185
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik
Downstream geneVdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41, Amph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P19.T7 (MSMg01no269_p19.b1)MSMg01-269P19.TJ (MSMg01no269_p19.g1)
ACCAG409952AG409953
length719723
length of high quality
(start - end)
321 (46 - 366)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no269_p19.b1 PHD_FILE: MSMg01no269_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:33 2005CHROMAT_FILE: MSMg01no269_p19.g1 PHD_FILE: MSMg01no269_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTTGCCAGTAGTCAATATCTATAACTGGATTACAATGTGGAA
GAATTTGAAGTAAAGAAGAAACAGGCATAAAATAATTCCCCAGTGTAGAA
CTCTGGTGAGCCTTAGCTTACCGTTGACCCCTTGAGCGAACCATGTGGAG
CTGGGAATCAATAGAAAAAGCAAGAGAAATTTATTGTTCCAGTGCACTGA
GGTCATCTCAGAATGGAAAGAGAGGCGGTGACCCCTGGTGGTCCATTCTA
TGAGTTTTTATATGGTTTCCAGGGGCGGAATAGAGCATCAGGAACTAGGC
ACAATATGATTGGCATATTATTCACCTTTCACACTCATTGGTCTTTAGGG
AACGAGGTAGTAGGGGCTTACTTAGCCTCTCCCTTCTGGCCTACATGCTC
TCTGACCTGTCTCTTCCAGGAGGGGCGGAGTCCAGTGGAATTTTCCAAGG
GCTCTGAGCTGACCTCTTGACCCGTTCTTCTGAGAGCTAGTGGGCTTTTT
TTCACTTGCTCTTCAGCTTTTTACATTCTCATTACAATGAGAATAATGCT
TTATTCTCTTAGCAGAGCTGAGTATTGAGCCACTTGTTTACTTTTAACTG
TGACTAAAGGAGAAAGACTTTTGATAAAGGGTCTCCACGTTTGAAAACTT
TGTCATCAGGTCATTTTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAACCTGGGCTACATATCAAG
TCTAGAGCCAGTCTAGGTTAAGCAGTGAGACCTGTATTGATTTTTTTTTT
AAGTTTTGTTTTTCTTTGTGTTTAATTTTTGTCTTTTCTGGGGGTGGGAC
ATGTGTTTGTTTACTTTTCCACGTGATAAGAATCCTGATAGCCCTCTCCA
GGACCTTGTTGCTAGTATCATTTTGATTCTGGACTTATGAAGTAAATTAA
AAGCTGAGATAAGTGTCTACATGACCTAAGAGGGGAGAAAAGGATACTCT
TAAGTAAAGAAGTCTTTTTATGCCACCCCCCCCCTGATAATAATTTTAGA
GTCACTTTTTTTTTACTGTTATCTTTGGAAATCTGAGGGGAGATATATGA
GGAGAGGCGGAAAGGCTGGAGCTGAGACAACAGGACAGAGAGAAGTACAT
GTGCAGCTGAGAGCAAATGGTGACCCACAGGATCACTGTCTGAGTGAGTC
TCTCTGAACCAGTTCTCAGTTCAGTTTGGACACACCCTACTCAACTCTCT
CATATATCTATGTTATCTAATGATTATCATTTAAAGGTTATTGTAAAATA
CATGGTTTGGGATGCTGTCAAAGATATTTTATGGAATGCTATCCTCAGCT
ACTGATAAAAAGGAGGAAGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p19.g1 MSMg01no269_p19.g1 CHROMAT_FILE:
MSMg01no269_p19.g1 PHD_FILE: MSMg01no269_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:33 2005
         (288 letters)



>mm_chr13_18112641_18113327
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccaacctgggctacatatcaagtctagagccagtctaggttaagcagtgagacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaggccaacctgggctacatatcaagtctagagccagtctaggttaagcagtgagacctg 486

                                                                       
Query: 61  tattgattttttttttaagttttgtttttctttgtgtttaatttttgtcttttctggggg 120
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 485 tattga-tttttttttaagttttgtttttctttgtgtttagtttttgtcttttctagggg 427

                                                                       
Query: 121 tgggacatgtgtttgtttacttttccacgtgataagaatcctgatagccctctccaggac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 426 tgggacatgtgtttgtttacttttccatgtgataagaatcctgatagccctctccaggac 367

                                                                       
Query: 181 cttgttgctagtatcattttgattctggacttatgaagtaaattaaaagctgagataagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttgttgctagtatcattttgattctggacttatgaagtaaattaaaagctgagataagt 307

                                                           
Query: 241 gtctacatgacctaagaggggagaaaaggatactcttaagtaaagaag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtctacatgacctaagaggggagaaaaggatactcttaagtaaagaag 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)