BAC Information

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BAC

Clone NameMSMg01-270I05
Chromosome13 (Build37)
Map Location 53,909,339 - 54,071,410
singlet/doubletdoublet
Overlap geneE130119H09Rik
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270I05.T7 (MSMg01no270_i05.b1)MSMg01-270I05.TJ (MSMg01no270_i05.g1)
ACCAG410327AG410328
length734743
length of high quality
(start - end)		323 (40 - 362)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no270_i05.b1 PHD_FILE: MSMg01no270_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:11 2005CHROMAT_FILE: MSMg01no270_i05.g1 PHD_FILE: MSMg01no270_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,909,339 - 53,909,656)(54,070,839 - 54,071,410)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCTGAGGACTGTATTAGACAGCACACAAGATGGCTAAGTGCCACAGGTAG
TCAGGGAAGCTTTTAATAAGTCTGAAGCCCAAGAAAAGCCCAAACATGTA
AGGTTTGTGCGCAGGACCTGTGCTGGAGGTAATCACCGTGGTGTTATCAA
AATGACTTGCTATACGGGGCTGGAAGAATCTTTAGAAACACGTATACCTC
TTGGCCTTTGGGATATGTCAATCATAAAAGATCAAGAGGAGCCTTCTTAG
TGCTCATAGAACGGCAGGCCCAGAGGGGAATTTAAGCTGAGGTGATTATG
GGATTACATTATTTTCTTCCCTACACATTGCTATTCGAGTACCCGCTTGA
TTTAATGGTTACAGAAGGTTAACACACATCCCAGGCAGGAATCCAGGTGC
TCTCATCTGGTTTGGAGCCAGCGGGATAGTGGCACAAGGTGCTGGTGGCA
TTTGGGTAATTCTGGCCTGCTTGAGAATGTGAAACAAGCCACTGTACATC
GGTGGGGGGTGGCAGGGCAGGGAGCAGTTAGTGGGGAGAGACTGAAGTTA
GATAAAGTGGGCTGAACGAGGACCACAGAAAGAGCACTAGAAGCCAAAGG
AGGGATTTGAGTTTGATTCTACGTANAATAGGGAGCTGTTGACATTCTGG
GAGCCTTAGACGAATATTTGTGTGAAGACGTTCT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTAAGGACA
AACTAGGACCGTTGGAACACTGGCGGACGGCTTTAGCTATGTCAGAATTC
AATCTTAAAAGGCACTTATGATAGGAAAATATTGAAAGAGAGCACGTGGA
TCCATACACTAGACTAACTCGGGAATGGAACGCGGGAATGAAAAATTACT
GTATGGGTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCT
TTTGCCTCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTCGA
CCAGAGAGCGTAGCAATATGGACTTAGACTACACACTCATGGGCTTTCTT
CTTAATTAACTCCCAATCTCTAAATGCAATTACATTCTGGGATACAGTAT
TTGAAAGCTGGAGGTGGGGAAATTGGAAAAGGAGATAAAACCACTCCCCA
TAATATCTAGAATGTATTCATTCCCTGCAGAGGTCTTTTTATTCTACCTT
GTTCCAAATTTAAACACTTTGCATTTCAAACTCAGATGTTTAACATTGAC
AACCTGCCCCAGGCAACTGAGTGAAGCCAGCGCTTGTACAGCTAAAACGG
TAGAACAGAACAGGAACCATTTCTATCCAGGTCTGATCCAACTGGACCAA
GGGGCCCCCACATCCCTGCCTTTGAAGACTTGCTCGGTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_i05.b1 MSMg01no270_i05.b1 CHROMAT_FILE:
MSMg01no270_i05.b1 PHD_FILE: MSMg01no270_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:11 2005
         (323 letters)



>mm_chr13_53909135_53909857
          Length = 723

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctgaggactgtattagacagcacacaagatggctaagtgccacaggtagtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgaggactgtattagacagcacacaagatggctaagtgccacaggtagtca 264

                                                                       
Query: 65  gggaagcttttaataagtctgaagcccaagaaaagcccaaacatgtaaggtttgtgcgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggaagcttttaataagtctgaagcccaagaaaagcccaaacatgtaaggtttgtgcgca 324

                                                                       
Query: 125 ggacctgtgctggaggtaatcaccgtggtgttatcaaaatgacttgctatacggggctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacctgtgctggaggtaatcaccgtggtgttatcaaaatgacttgctatacggggctgg 384

                                                                       
Query: 185 aagaatctttagaaacacgtatacctcttggcctttgggatatgtcaatcataaaagatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaatctttagaaacacgtatacctcttggcctttgggatatgtcaatcataaaagatc 444

                                                                       
Query: 245 aagaggagccttcttagtgctcatagaacggcaggcccagaggggaatttaagctgaggt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 aagaggagccttcttagtgctcatagaacggcaggcccagaggggaatttgagctgaggt 504

                             
Query: 305 gattatgggattacatta 322
           ||||||||||||||||||
Sbjct: 505 gattatgggattacatta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_i05.g1 MSMg01no270_i05.g1 CHROMAT_FILE:
MSMg01no270_i05.g1 PHD_FILE: MSMg01no270_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:11 2005
         (662 letters)



>mm_chr13_54070349_54071410
          Length = 1062

 Score = 1044 bits (540), Expect = 0.0
 Identities = 564/572 (98%)
 Strand = Plus / Minus

                                                                        
Query: 91   ttatgataggaaaatattgaaagagagcacgtggatccatacactagactaactcgggaa 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ttatgataggaaaatattgaaagagagcacgtggatccatacactagactaactcgggaa 1003

                                                                        
Query: 151  tggaacgcgggaatgaaaaattactgtatgggtagggaacgctagactccaggaggagag 210
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1002 tggaacgcgggaatgaaaaattactgtatgggcagggaacgctagactccaggaggagag 943

                                                                        
Query: 211  cttccttgaaactcttttgcctcatgagtgacttttaagcctctcggcttgtccagttga 270
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 942  cttccttgaaactcttttgcctcatgagtgacttttaagactctcggcttgtccagttta 883

                                                                        
Query: 271  ctcgaccagagagcgtagcaatatggacttagactacacactcatgggctttcttcttaa 330
            |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 882  ctcgaccagagagcgtagaaatatggacttagactacacactcgtgggctttcttcttaa 823

                                                                        
Query: 331  ttaactcccaatctctaaatgcaattacattctgggatacagtatttgaaagctggaggt 390
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 822  ttaactcccaatctctaaatgcaattacattctggggtacagtatttgaaagctggaggt 763

                                                                        
Query: 391  ggggaaattggaaaaggagataaaaccactccccataatatctagaatgtattcattccc 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  ggggaaattggaaaaggagataaaaccactccccataatatctagaatgtattcattccc 703

                                                                        
Query: 451  tgcagaggtctttttattctaccttgttccaaatttaaacactttgcatttcaaactcag 510
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 702  tgcagaggtctttttattctaccttgttccaaatttaaacactttacatttcaaactcag 643

                                                                        
Query: 511  atgtttaacattgacaacctgccccaggcaactgagtgaagccagcgcttgtacagctaa 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  atgtttaacattgacaacctgccccaggcaactgagtgaagccagcgcttgtacagctaa 583

                                                                        
Query: 571  aacggtagaacagaacaggaaccatttctatccaggtctgatccaactggaccaaggggc 630
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  gacggtagaacagaacaggaaccatttctatccaggtctgatccaactggaccaaggggc 523

                                            
Query: 631  ccccacatccctgcctttgaagacttgctcgg 662
            ||||||||||||||||||||||||||||||||
Sbjct: 522  ccccacatccctgcctttgaagacttgctcgg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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