BAC Information

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BAC

Clone NameMSMg01-270L23
Chromosome13 (Build37)
Map Location 40,666,009 - 40,838,719
singlet/doubletdoublet
Overlap geneLOC100039048, Tcfap2a
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneEG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270L23.T7 (MSMg01no270_l23.b1)MSMg01-270L23.TJ (MSMg01no270_l23.g1)
ACCAG410494AG410495
length730761
length of high quality
(start - end)		323 (44 - 366)239 (123 - 361)
definitionCHROMAT_FILE: MSMg01no270_l23.b1 PHD_FILE: MSMg01no270_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:29 2005CHROMAT_FILE: MSMg01no270_l23.g1 PHD_FILE: MSMg01no270_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,666,009 - 40,666,325)(40,838,481 - 40,838,719)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGCCATCTTTAAAGAAAAACAAAATTATGAAATTTTTTGGTGAATG
GATAAGAGTTGGAAAAATATGCTAAATGAGGTAAGCCAGACTCGGAAACA
TAAAAGCTCCATGATCCTTTGCACATGGGGAGCCTAGCTTTGAATTGTTA
GATTTGAGTATAGGACCCAGAATAACCATAGACGCCAGGAAAGAAGAAAG
GAAGTATGATAGGGTGGTTGGGCTCTGTACAGGAGGCTAGCAGGGTTCAG
GTACTTTGAAAGGAAAGGAGAAACAAGATGACTTTCACTGGGGAGCAGAA
GGAAGTGTTATTCATATTATTTGCTGCCCCCACCCGCAAAACAGCATTAG
TAATGTTTGAAAAGGGAAACCTTCTTAAAGTTTAACTAAAACGCCTGTAT
TGTATATATTTTAAAGAGTTTTACCACATGGGATGATAATGTTTCCAAAG
AGAGGCATCACCATCTATCCAAAAGCCCAGTGCCAGAGACCTCCCTTCAA
GTGGCTGATCATGTTAGTTTGAGAGCCTCCCCTCAAAGAACAGGCTACTG
TTGTTGCCCTTAGTTGTGTCCTAGAAGTTGAAGATAAGTCCCTTTTGCTG
AAGACAACATGTACATCAGACACAGGACTTGATACATACATCTCTAACAC
AATTCCTTCACCTAAGGNCCAGGNAACATT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACACTGGAAATTCTTCCAGCCAGATCTGAGG
CAAACTTCTAACTCTTCTTCTCCCCCTCTGGACTCAGGCTGGTCTTTTAG
GACCCAACATGATCTCTTAAAGTCTAATGGCCACAGACATTTCAGACTCG
GGTAACAGGCGCCAAGACTCCCCAGTTTAGGGTGGCTTGTACGCACAGGA
GTTCAAACTCCCAAATGTGGATGTGTATGCTTCATGGATTATGATGGGGG
GGGGGTTAGAAATGCCAGGGGTGGGGGTGGTAAGTCAGGAAACAATTTTG
AATGCTCAGGTATTTTTTCAAGCGCCCACCCCCTAGTGAGTTCTGAAAAG
TAATACCAAGGCCGACAAAGCAGTCTGAAAGGAAGAATTCCTTCTCTTAA
TTTGTTTGTTTGAAAGCAATGGAGAGGCAGGCAGAGACACCTTGGTGGAA
CCCCCCAGTCATTCCAGTCATCCCAGTCCTTGAGCTTGGCTACACAAAGC
TCCTCTCATCCTGTTTTAAACCTGGAAACATTTAGAAGACTCCAAGGCTT
GCGGGTGAAGACAAGGCTCTCTCATGGTGTCTTAGGACTAATCTTTCCAG
CGTTGCCTTGACATTTAGTGGGTACCACCTGGCTCTATCTTAATCTTTTC
CCCTGTCCAGAACACCTTCAGGAGAATGAAGCCTTTGCACGAGGCAAAAT
CTACTGGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_l23.b1 MSMg01no270_l23.b1 CHROMAT_FILE:
MSMg01no270_l23.b1 PHD_FILE: MSMg01no270_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:29 2005
         (323 letters)



>mm_chr13_40665805_40666527
          Length = 723

 Score =  543 bits (281), Expect = e-159
 Identities = 308/317 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagccatctttaaagaaaaacaaaattatgaaattttttggtgaatggataaga 64
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 205 gaattctagccatctttaaagaaaaacaaaatcatgaaatttttaggtgaatggataaga 264

                                                                       
Query: 65  gttggaaaaatatgctaaatgaggtaagccagactcggaaacataaaagctccatgatcc 124
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 gttggaaaaatgtgctaaatgaggtaagccagactcagaaacataaaagctccatgatcc 324

                                                                       
Query: 125 tttgcacatggggagcctagctttgaattgttagatttgagtataggacccagaataacc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 325 tttgcacgtggggagcctagctttgaattgttagatttgagtataggacctggaataacc 384

                                                                       
Query: 185 atagacgccaggaaagaagaaaggaagtatgatagggtggttgggctctgtacaggaggc 244
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 acagacgccaggaaagaagaaaggaagtatgatagggtgtttgggctctgtacaggaggc 444

                                                                       
Query: 245 tagcagggttcaggtactttgaaaggaaaggagaaacaagatgactttcactggggagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcagggttcaggtactttgaaaggaaaggagaaacaagatgactttcactggggagca 504

                            
Query: 305 gaaggaagtgttattca 321
           |||||||||||||||||
Sbjct: 505 gaaggaagtgttattca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_l23.g1 MSMg01no270_l23.g1 CHROMAT_FILE:
MSMg01no270_l23.g1 PHD_FILE: MSMg01no270_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:29 2005
         (239 letters)



>mm_chr13_40838281_40838919
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccctctggactcaggctggtcttttaggacccaacatgatctcttaaagtctaatggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccctctggactcaggctggtcttttaggacccaacatgatctcttaaagtctaatggcc 380

                                                                       
Query: 61  acagacatttcagactcgggtaacaggcgccaagactccccagtttagggtggcttgtac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 acagacatttcagactcgggtaacaggcgccaagactccccaatttagggtggcttgtac 320

                                                                       
Query: 121 gcacaggagttcaaactcccaaatgtggatgtgtatgcttcatggattatgatggggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcacaggagttcaaactcccaaatgtggatgtgtatgcttcatggattatgatggggggg 260

                                                                      
Query: 181 gggttagaaatgccaggggtgggggtggtaagtcaggaaacaattttgaatgctcaggt 239
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtttagaaatgccaggggtgggggtggtaagtcaggaaacaattttgaatgctcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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