BAC Information

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BAC

Clone NameMSMg01-271F08
Chromosome13 (Build37)
Map Location 91,821,199 - 91,821,508
singlet/doubletsinglet
Overlap geneSsbp2
Upstream geneEG435376, Rps23, Atg10, LOC100042959, LOC666889
Downstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F08.T7 (MSMg01no271_f08.b1)MSMg01-271F08.TJ (MSMg01no271_f08.g1)
ACCAG410917AG410918
length753745
length of high quality
(start - end)
313 (43 - 355)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no271_f08.b1 PHD_FILE: MSMg01no271_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:11 2005CHROMAT_FILE: MSMg01no271_f08.g1 PHD_FILE: MSMg01no271_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAAGCACTCATAGGACCCTCTGGAACTGGAGTTATGACACCATTTGC
CATTGAATGTGAAACAAATCTCAGTTCTCCAATCCTGCTTATTGAGGTCG
ACAGGTCCCTTTGCCAGGTCTTGGCTGAGATTCTGCACTGGTCTACTTGA
TTCATTTTGCCTAGTTCCCATAGAGTCACAGTACTGAAGCATGCATCCAA
ACACTATAAAACCTCTTATTTCCTATAGCATGCAGTCATTCCTGGTCCAA
TCATGTGGTCTTATCATTAACTACACAGCCTGTAAGTCTTACAGTGTAAC
AGCCATATTTTTATTTTTTTTCACCATCCATAGCATTCCCCGATTATACT
GTGCACTCTCTCATTCCCTTTCCTTCCTTTGGCTTGCCTCATCTTTCCTC
ATCTACACCTTCTTCCTGTGTACCCAGATTTCCAGCTCAGATTTACCACT
ACACTCCCATGGTATTTCTGTCTTTTGATGTAATGTATGTTTTTATACTA
TACTATTAGATACTTCTAACAACTCACAAAAGTACAGGCTCAGTTATGTG
CCAGGGATAGGAGCCCAAATGCTGATTTAGAGTCAGAAAACCGAAGAACC
ATTTGGTAATGTGAAATCTGACAAATGAGAATAGTTATACCAAAGAAGTA
GATAAATACAGCCCAAGAATTCTTCTTCCTCCTAAAAGTGACAAGGTTTC
AGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCGCATCTTTTAA
TAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCTATCTGATTTAGGATAGGCAAAGATCCTTTCCCA
ATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGA
AGATTTGCAATTTACGAGGTCCCATTGGTCGATTCTCGATCTTACAGCAC
AAGCCATTGCTGTTCTATTCTGGAATTTCTTAGAATTGGGAACAAAACAC
CCATGGAATGAGTTATTCACCACCACCCCGCAGCTGAGATGAAAGGATGG
ACCATGTAGAGACCGCCATATCCAAAGATCCACCCCATAATCAGCATCCA
AATGCTGACACCATTGCATACACTAGCAAGATTGTATTGAAAGGACCCAG
ATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGT
GGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGATGA
GCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATCCTATAGGTGG
AACAACAATATGAACTAACCAGTACCCCACCACCACCCCCCCGCGAGCTC
GTGTCTCTATTCTGCATATGAACACTAACATGGTCTTTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f08.b1 MSMg01no271_f08.b1 CHROMAT_FILE:
MSMg01no271_f08.b1 PHD_FILE: MSMg01no271_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:11 2005
         (313 letters)



>mm_chr13_91820996_91821708
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaagcactcataggaccctctggaactggagttatgacaccatttgccattg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaagcactcataggaccctctggaactggagttatgacaccatttgccattg 263

                                                                       
Query: 64  aatgtgaaacaaatctcagttctccaatcctgcttattgaggtcgacaggtccctttgcc 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgtgaaacaactctcagttctccaatcctgcttattgaggtcgacaggtccctttgcc 323

                                                                       
Query: 124 aggtcttggctgagattctgcactggtctacttgattcattttgcctagttcccatagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtcttggctgagattctgcactggtctacttgattcattttgcctagttcccatagag 383

                                                                       
Query: 184 tcacagtactgaagcatgcatccaaacactataaaacctcttatttcctatagcatgcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcacagtactgaagcatgcatccaaacactataaaacctcttatttcctatagcatgcag 443

                                                                       
Query: 244 tcattcctggtccaatcatgtggtcttatcattaactacacagcctgtaagtcttacagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcattcctggtccaatcatgtggtcttatcattaactacacagcctgtaagtcttacagt 503

                     
Query: 304 gtaacagcca 313
           ||||||||||
Sbjct: 504 gtaacagcca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)